当前解析结果
SmilChr06G000063| 统一新 Gene ID | SmilChr06G000063 |
|---|---|
| 名称 | SmilChr06G000063 |
| 描述 | 1-acyl-sn-glycerol-3-phosphate acyltransferase BAT2, chloroplastic |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 514592 - 517978 / - |
| NCBI Gene ID | LOC130987608 |
|---|---|
| GeneID | 130987608 |
| locus_tag | - |
| NCBI Name | LOC130987608 |
| 原始查询 | LOC130987608 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 1-acyl-sn-glycerol-3-phosphate acyltransferase BAT2, chloroplastic |
| 产物 | 1-acyl-sn-glycerol-3-phosphate acyltransferase BAT2%2C chloroplastic |
| Arabidopsis | AT4G30580 (ATS2)Phospholipid/glycerol acyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829181] identity=64.5; qcov=0.716; evalue=6.59e-124; confidence=high |
| Rice | Os10g0497100- identity=64.5; qcov=0.738; evalue=1.75e-126; confidence=high |
| GO | GO:0003841 (1-acylglycerol-3-phosphate O-acyltransferase activity); GO:0006654 (phosphatidic acid biosynthetic process); GO:0016020 (membrane) |
| KEGG | smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01553 (Acyltransferase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987608 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057767182.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057767182.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057767182.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057767182.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057767182.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:514763 |
CT |
C |
1bp_deletion | frameshift_variant | 11 | B11,B136,B44,B5,B58,B89,C17,C50,C57,C79,D7 |
Chr6:514853 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:515394 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A14,A24,C19,C49,D4 |
Chr6:515503 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:515609 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:515998 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,C16 |
Chr6:517788 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B131,B35,C37,C41,C6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057767182.1PF01553
Acyltransferase 192-318 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767182.1 |
Pfam | PF01553 |
Acyltransferase | Family | 192 | 318 | 2.1e-30 | 105.9 | Acyltransferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。