Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000072`

染色体: Chr06 坐标: 551631-554649 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000072`
名称	SmilChr06G000072
描述	uncharacterized SmilChr06G000072
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	551631 - 554649 / `-`

ID 对照

NCBI Gene ID	`LOC130987616`
GeneID	`130987616`
locus_tag	`-`
NCBI Name	`LOC130987616`
原始查询	`LOC130987616`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zein-binding protein (Protein of unknown function, DUF593) [Source:NCBI gene (formerly Entrezgene);Acc:835893]; symbol=AT5G57830; hit=AT5G57830; species=arabidopsis; confidence=medium
产物	zein-binding protein (Protein of unknown function, DUF593) [Source:NCBI gene (formerly Entrezgene);Acc:835893]; symbol=AT5G57830; hit=AT5G57830; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G57830` (AT5G57830) zein-binding protein (Protein of unknown function, DUF593) [Source:NCBI gene (formerly Entrezgene);Acc:835893] identity=47.4; qcov=0.501; evalue=3.3e-41; confidence=medium
Rice	`Os08g0442350` - identity=36.9; qcov=0.373; evalue=4.13e-17; confidence=low
GO	-
KEGG	-
Pfam	PF04576 (Zein-binding)
InterPro	-
eggNOG	-
NR	GeneID:130987616

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.60000	`XP_057767196.1`
2	Cytoplasm	细胞质	0.40000	`XP_057767195.1`
3	Cytosol	细胞质基质	0.20000	`XP_057767195.1`
4	Cell membrane	细胞膜	0.20000	`XP_057767195.1`
5	Chromosome	染色体	0.00000	`XP_057767196.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:552628`	`TGG`	`T`	2bp_deletion	frameshift_variant	9	B13,B2,B48,B93,B99,C32,C51,C68,C80
`Chr6:552647`	`AG`	`A`	1bp_deletion	frameshift_variant	9	B10,B105,B18,B76,B87,C1,C14,C73,D9
`Chr6:552848`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr6:552904`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B129,B91
`Chr6:552949`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr6:553039`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B20,D7
`Chr6:553267`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr6:553374`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A11,A5,D3
`Chr6:553555`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B66,B86,B94
`Chr6:553627`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B137,C55,C84
`Chr6:553738`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B13,C51,D11
`Chr6:553783`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B66,B86,B94

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767195.1

437 aa

218

437

Zein-binding

PF04576 Zein-binding 14-104 aa

XP_057767196.1

429 aa

214

429

Zein-binding

PF04576 Zein-binding 14-104 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767195.1`	Pfam	`PF04576`	Zein-binding	Coiled-coil	14	104	3.8e-30	104.7	Zein-binding
`XP_057767196.1`	Pfam	`PF04576`	Zein-binding	Coiled-coil	14	104	3.7e-30	104.8	Zein-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911213.1
GAATACCCGCCACCCAAATCTGCTCCATATATGAAGAAAAAATAAAATAAAAAGCATTATATGAATCATTATATACGTATATCATCAGCTTGTTCATTCATGTATATTATAGTATTTGTTTATACGTAATTTAGTTGCCAGAATAAATAGCAACCGGAAAATCTAAATCACTTTTTTTTTTCTTGTTGTTGTGAAAAGACAAATTAATAAACCGTTACAAGATTTCTTCCATGTTGCAGTTTTCATTTTTTCTGGGGATT...

XM_057911212.1
CTCCATATATGAAGAAAAAATAAAATAAAAAGCATTATATGAATCATTATATACGTATATCATCAGCTTGTTCATTCATGTATATTATAGTATTTGTTTATACGTAATTTAGTTGCCAGAATAAATAGCAACCGGAAAATCTAAATCACTTTTTTTTTTCTTGTTGTTGTGAAAAGACAAATTAATAAACCGTTACAAGATTTCTTCCATGTTGCAGTTTTCATTTTTTCTGGGGATTCTTGATTTTTTTTCCGAGCCTT...

CDS

2 records

下载 CDS FASTA

LOC130987616
ATGTGTCGGAATCCGATGGGTGATGATGATGATATTCGTGCTCTAAAAGATACACTATGTGCTCAGCAGGAGCTTCTGCAGAAGCTCTACAATGAGTTGGATGCAGAGAGGGAGGCCTCTGCCTCGGCTGCCAGCGAGGCCCTGGCCGTGATCCTCCGGCTGCAGGGAGAGAAGGCGGCCGTGAAGATGGAGGCGGAGCATTACAAGAGGCTGTCGGAGGAGAAGATATGCCATGCTGAGGAATCCTTAGCCATGATAGA...

Protein

2 records

下载 Protein FASTA

XP_057767195.1
MCRNPMGDDDDIRALKDTLCAQQELLQKLYNELDAEREASASAASEALAVILRLQGEKAAVKMEAEHYKRLSEEKICHAEESLAMIEDAVYQKEMEVAALDYQVQAYRHKLLSMGCDDHGFGGETSVGCSIGRRHSVPLSSRGKSALSERDGCSVQGRDLVSGAVEGKVVEEICGKEGLDSGKKIDSYRERIRRLDEKVKEIAGGSYMSSSRSETRSPSSSVSSRVSRGSSCDPTRNEGSLCQPDKMMDGSDHEVKSSDG...

XP_057767196.1
MCRNPMGDDDDIRALKDTLCAQQELLQKLYNELDAEREASASAASEALAVILRLQGEKAAVKMEAEHYKRLSEEKICHAEESLAMIEDAVYQKEMEVAALDYQVQAYRHKLLSMGCDDHGFGGETSVGCSIGRRHSVPLSSRGKSALSERDGCSVQGRDLVSGAVEGKVVEEICGKEGLDSGKKIDSYRERIRRLDEKVKEIAGGSYMSSSRSETRSPSSSVSSRVSRGSSCDPTRNEGSLCQPDKMMDGSDHEVKSSDG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器