当前解析结果
SmilChr06G000073| 统一新 Gene ID | SmilChr06G000073 |
|---|---|
| 名称 | SmilChr06G000073 |
| 描述 | uncharacterized SmilChr06G000073 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 558431 - 560792 / + |
| NCBI Gene ID | LOC130987617 |
|---|---|
| GeneID | 130987617 |
| locus_tag | - |
| NCBI Name | LOC130987617 |
| 原始查询 | LOC130987617 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836421]; symbol=AT5G63010; hit=AT5G63010; species=arabidopsis; confidence=high |
| 产物 | Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836421]; symbol=AT5G63010; hit=AT5G63010; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G63010 (AT5G63010)Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836421] identity=61.9; qcov=0.991; evalue=1.21e-154; confidence=high |
| Rice | Os04g0507900 (OsWD40-102)- identity=56.9; qcov=0.997; evalue=4.03e-136; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00400 (WD40) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987617 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057767197.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057767197.1 |
| 3 | Nucleoplasm | 核质 | 0.80000 | XP_057767197.1 |
| 4 | Nucleus | 细胞核 | 0.60000 | XP_057767197.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057767197.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:558804 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B106,B64,B98,C81 |
Chr6:558846 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,D11 |
Chr6:558881 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:558966 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr6:558976 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:558982 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B114,B47,C63 |
Chr6:559985 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C5,C85,D9 |
Chr6:560018 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:560084 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B41,B66,B94,D2 |
Chr6:560108 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr6:560126 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B114,B47,C63 |
Chr6:560131 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C29 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057767197.1PF00400
WD40 156-192 aa
PF00400
WD40 205-238 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767197.1 |
Pfam | PF00400 |
WD40 | Repeat | 156 | 192 | 9.4e-15 | 55.1 | WD domain, G-beta repeat |
XP_057767197.1 |
Pfam | PF00400 |
WD40 | Repeat | 205 | 238 | 9.4e-15 | 55.1 | WD domain, G-beta repeat |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。