当前解析结果
SmilChr06G000103| 统一新 Gene ID | SmilChr06G000103 |
|---|---|
| 名称 | SmilChr06G000103 |
| 描述 | UDP-glucuronate 4-epimerase 1 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 737179 - 739091 / + |
| NCBI Gene ID | LOC130987649 |
|---|---|
| GeneID | 130987649 |
| locus_tag | - |
| NCBI Name | LOC130987649 |
| 原始查询 | LOC130987649 |
| 来源 | GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | UDP-glucuronate 4-epimerase 1 |
| 产物 | UDP-glucuronate 4-epimerase 1 |
| Arabidopsis | AT4G30440 (GAE1)UDP-D-glucuronate 4-epimerase 1 [Source:NCBI gene (formerly Entrezgene);Acc:829167] identity=84.6; qcov=0.988; evalue=0; confidence=high |
| Rice | Os02g0791500 (OsUGlcAE3)- identity=80.1; qcov=0.998; evalue=0; confidence=high |
| GO | - |
| KEGG | smil00053 (Ascorbate and aldarate metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01073 (3Beta_HSD); PF01370 (Epimerase); PF02719 (Polysacc_synt_2); PF04321 (RmlD_sub_bind); PF07993 (NAD_binding_4); PF16363 (GDP_Man_Dehyd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987649 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057767231.1 |
| 2 | Golgi stack | 高尔基堆 | 0.20000 | XP_057767231.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057767231.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057767231.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057767231.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:737654 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A10,B18,C43 |
Chr6:737674 |
CG |
C |
1bp_deletion | frameshift_variant | 1 | B22 |
Chr6:737674 |
CG |
C |
1bp_deletion | CDS_variant | 1 | B22 |
Chr6:737675 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B106,B96,C66,C76 |
Chr6:737700 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B111,B73,C87 |
Chr6:737902 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr6:737905 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr6:738161 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr6:738374 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A24,B140,B22 |
Chr6:738473 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B23,B53,C42 |
Chr6:738494 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr6:738732 |
CA |
C |
1bp_deletion | frameshift_variant | 2 | A5,C58 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767231.1PF04321
RmlD_sub_bind 95-276 aa
PF02719
Polysacc_synt_2 95-316 aa
PF01370
Epimerase 95-330 aa
PF01073
3Beta_HSD 96-376 aa
PF16363
GDP_Man_Dehyd 96-415 aa
PF07993
NAD_binding_4 136-282 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767231.1 |
Pfam | PF04321 |
RmlD_sub_bind | Domain | 95 | 276 | 6e-14 | 52.5 | RmlD substrate binding domain |
XP_057767231.1 |
Pfam | PF02719 |
Polysacc_synt_2 | Family | 95 | 316 | 8.4e-11 | 42.3 | Polysaccharide biosynthesis protein |
XP_057767231.1 |
Pfam | PF01370 |
Epimerase | Family | 95 | 330 | 4e-52 | 177.7 | NAD dependent epimerase/dehydratase family |
XP_057767231.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 96 | 376 | 9.8e-16 | 58.3 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057767231.1 |
Pfam | PF16363 |
GDP_Man_Dehyd | Domain | 96 | 415 | 1e-50 | 173.8 | GDP-mannose 4,6 dehydratase |
XP_057767231.1 |
Pfam | PF07993 |
NAD_binding_4 | Family | 136 | 282 | 8.1e-06 | 25.9 | Male sterility protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。