当前解析结果
SmilChr06G000107| 统一新 Gene ID | SmilChr06G000107 |
|---|---|
| 名称 | SmilChr06G000107 |
| 描述 | uncharacterized SmilChr06G000107 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 759038 - 764355 / - |
| NCBI Gene ID | LOC130987654 |
|---|---|
| GeneID | 130987654 |
| locus_tag | - |
| NCBI Name | LOC130987654 |
| 原始查询 | LOC130987654 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | AFG1-like ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828922]; symbol=AT4G28070; hit=AT4G28070; species=arabidopsis; confidence=high |
| 产物 | AFG1-like ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828922]; symbol=AT4G28070; hit=AT4G28070; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G28070 (AT4G28070)AFG1-like ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828922] identity=80.3; qcov=0.825; evalue=0; confidence=high |
| Rice | Os03g0851900- identity=29.1; qcov=0.835; evalue=5.86e-47; confidence=low |
| GO | GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0005739 (mitochondrion); GO:0009507 (chloroplast); GO:0016887 (ATP hydrolysis activity) |
| KEGG | - |
| Pfam | PF03969 (AFG1_ATPase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987654 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057767237.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 0.80000 | XP_057767237.1 |
| 3 | Mitochondrion membrane | 线粒体膜 | 0.20000 | XP_057767237.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057767237.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057767237.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:759754 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr6:759841 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A4,B108,B2,C23 |
Chr6:760324 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B114,B129,B47 |
Chr6:760337 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr6:760570 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C62,C75 |
Chr6:761381 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B137 |
Chr6:762267 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr6:762695 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B120,C9,D7 |
Chr6:762696 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,C17,C40,C77,D7 |
Chr6:763431 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057767237.1PF03969
AFG1_ATPase 85-427 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767237.1 |
Pfam | PF03969 |
AFG1_ATPase | Family | 85 | 427 | 5.9e-91 | 305.8 | AFG1-like ATPase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。