Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000108`

染色体: Chr06 坐标: 765292-767363 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000108`
名称	SmilChr06G000108
描述	uncharacterized SmilChr06G000108
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	765292 - 767363 / `+`

ID 对照

NCBI Gene ID	`LOC130987656`
GeneID	`130987656`
locus_tag	`-`
NCBI Name	`LOC130987656`
原始查询	`LOC130987656`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transmembrane protein (DUF788) [Source:NCBI gene (formerly Entrezgene);Acc:816926]; symbol=AT2G23940; hit=AT2G23940; species=arabidopsis; confidence=high
产物	transmembrane protein (DUF788) [Source:NCBI gene (formerly Entrezgene);Acc:816926]; symbol=AT2G23940; hit=AT2G23940; species=arabidopsis; confidence=high
Arabidopsis	`AT2G23940` (AT2G23940) transmembrane protein (DUF788) [Source:NCBI gene (formerly Entrezgene);Acc:816926] identity=77.5; qcov=1; evalue=4.79e-104; confidence=high
Rice	`Os02g0666800` - identity=62.1; qcov=1.01; evalue=4.67e-64; confidence=high
GO	GO:0006624 (vacuolar protein processing); GO:0043231 (intracellular membrane-bounded organelle)
KEGG	smil03060 (Protein export - Salvia miltiorrhiza (redroot sage))
Pfam	PF05620 (TMEM208_SND2)
InterPro	-
eggNOG	-
NR	GeneID:130987656

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057767241.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057767241.1`
3	Nucleus	细胞核	0.00000	`XP_057767241.1`
4	Chromosome	染色体	0.00000	`XP_057767241.1`
5	Centromere	着丝粒	0.00000	`XP_057767241.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:765722`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B47,C30,C55
`Chr6:765762`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr6:766238`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B2,C23,D11
`Chr6:766265`	`A`	`AGG`	2bp_insertion	frameshift_variant	1	C45
`Chr6:766265`	`A`	`AGG`	2bp_insertion	CDS_variant	1	C45
`Chr6:766275`	`A`	`AGG`	2bp_insertion	frameshift_variant	20	A21,B106,B107,B118,B125,B128,B140,B49,B55,B60,B64,B75,B86,B90,B92,C74,C79,C87,D10,D4
`Chr6:766278`	`G`	`GAA`	2bp_insertion	frameshift_variant	18	A16,B114,B123,B125,B126,B136,B21,B62,B63,B72,B74,B89,C47,C56,C6,C7,C81,D8
`Chr6:766363`	`A`	`AG`	1bp_insertion	frameshift_variant	3	A23,B15,C53
`Chr6:766363`	`A`	`AG`	1bp_insertion	CDS_variant	3	A23,B15,C53
`Chr6:766371`	`A`	`AT`	1bp_insertion	frameshift_variant	30	A15,A3,A7,A9,B108,B131,B140,B19,B24,B32,B35,B41,B42,B43,B5,B69,B82,B9,B95,C2,C39,C43,C5,C65,C77,C85,D10,D11,D6,D9
`Chr6:766379`	`T`	`TC`	1bp_insertion	frameshift_variant	7	A19,B12,B3,B97,C2,C38,C78
`Chr6:766934`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767241.1

180 aa

180

TMEM208_SND2

PF05620 TMEM208_SND2 1-122 aa

XP_057767242.1

173 aa

173

TMEM208_SND2

PF05620 TMEM208_SND2 1-162 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767241.1`	Pfam	`PF05620`	TMEM208_SND2	Family	1	122	9.9e-44	149.8	SRP-independent targeting protein 2/TMEM208
`XP_057767242.1`	Pfam	`PF05620`	TMEM208_SND2	Family	1	162	9e-59	198.8	SRP-independent targeting protein 2/TMEM208

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911259.1
CCCATAATCAAATTCAAGTCCAATACTAAACTGTAAAAAATCTTACAAAATACACAGAAATTTGGGAGAAAGCAAAATTTCCCCATTTTCTTCGTCTAATTCAGAAGCAGAATTCACAGTCTGCATCAAAACGACAGCGTTTCGGAGCTATGGCGAATCAAGGAGCGAAGAAGCGCAAAGAAGAAAACATCCGACACATGAAAACTCTGCTCCGTCTCATCATCGCTTCCAATGTGATCTATATAGTGCTGAGGATGGGA...

XM_057911258.1
AAAAAATCTTACAAAATACACAGAAATTTGGGAGAAAGCAAAATTTCCCCATTTTCTTCGTCTAATTCAGAAGCAGAATTCACAGTCTGCATCAAAACGACAGCGTTTCGGAGCTATGGCGAATCAAGGAGCGAAGAAGCGCAAAGAAGAAAACATCCGACACATGAAAACTCTGCTCCGTCTCATCATCGCTTCCAATGTGATCTATATAGTGCTGAGGATGGGAGTTTTCTACTCGAGTTTCACGTGGAAGCATTGGT...

CDS

2 records

下载 CDS FASTA

LOC130987656
ATGGCGAATCAAGGAGCGAAGAAGCGCAAAGAAGAAAACATCCGACACATGAAAACTCTGCTCCGTCTCATCATCGCTTCCAATGTGATCTATATAGTGCTGAGGATGGGAGTTTTCTACTCGAGTTTCACGTGGAAGCATTGGTTAGGCTTGATTTTGACTTCGCTGGCCTACGTGATCCCCTACCAGCAGCTGGATGCCATGGCGAAACCTAGTTACACTGAAGACGGCGAGCTTCTCGACGGCGGCTTCGATATGAG...

Protein

2 records

下载 Protein FASTA

XP_057767241.1
MANQGAKKRKEENIRHMKTLLRLIIASNVIYIVLRMGVFYSSFTWKHWLGLILTSLAYVIPYQQLDAMAKPSYTEDGELLDGGFDMSTGGICGYLHDVIYITCFVQLSSIISGKFWYIYLVVRHSIPSSSIIHHLIAEREREMHFTFLANNYMVMLFGLCIEQFKFPFFNKKITSPSWNN

XP_057767242.1
MANQGAKKRKEENIRHMKTLLRLIIASNVIYIVLRMGVFYSSFTWKHWLGLILTSLAYVIPYQQLDAMAKPSYTEDGELLDGGFDMSTGGICGYLHDVIYITCFVQLSSIISGKFWYIYLVIPGFAAYKLFGLVRGFMSQGSEGGEEDEKTKKKREKMEKRASRGKFVKTRTR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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