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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G000111

染色体: Chr06 坐标: 779496-783589 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G000111
名称SmilChr06G000111
描述protein FAR1-RELATED SEQUENCE 5-like
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向779496 - 783589 / +

ID 对照

NCBI Gene IDLOC130987658
GeneID130987658
locus_tag-
NCBI NameLOC130987658
原始查询LOC130987658

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述protein FAR1-RELATED SEQUENCE 5-like
产物protein FAR1-RELATED SEQUENCE 5-like
ArabidopsisAT4G38180 (FRS5)
FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974]
identity=30.3; qcov=0.767; evalue=2.42e-79; confidence=low
RiceOs06g0166100
-
identity=32.4; qcov=0.906; evalue=1.32e-119; confidence=low
GOGO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding)
KEGG-
PfamPF03101 (FAR1); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like)
InterPro-
eggNOG-
NRGeneID:130987658

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057767244.1
2 Chromosome 染色体 0.00000 XP_057767244.1
3 Centromere 着丝粒 0.00000 XP_057767244.1
4 Chromatin 染色质 0.00000 XP_057767244.1
5 Telomere 端粒 0.00000 XP_057767244.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:780897 G A EMS_canonical_SNV CDS_variant 1 C30
Chr6:781250 AT A 1bp_deletion frameshift_variant 2 B112,C81
Chr6:781250 AT A 1bp_deletion CDS_variant 2 B112,C81
Chr6:781523 C T EMS_canonical_SNV CDS_variant 1 B26
Chr6:781588 G A EMS_canonical_SNV CDS_variant 2 B107,C79
Chr6:781676 C T EMS_canonical_SNV CDS_variant 1 B77
Chr6:781735 G A EMS_canonical_SNV CDS_variant 1 D11
Chr6:781758 C T EMS_canonical_SNV CDS_variant 3 B117,B35,C84
Chr6:781795 T TA 1bp_insertion stop_gained,frameshift_variant 5 B117,B3,B35,B55,C84
Chr6:781795 T TA 1bp_insertion CDS_variant 5 B117,B3,B35,B55,C84
Chr6:781817 ATG A 2bp_deletion frameshift_variant 12 A4,A6,B117,B120,B135,B15,B3,B35,B44,B45,B75,C84
Chr6:781820 AC A 1bp_deletion frameshift_variant 11 A4,A6,B120,B135,B15,B3,B35,B44,B45,B75,C84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767244.1
735 aa
N
1
368
735
FAR1
ZSWIM1-3_RNaseH-like
MULE
C
PF03101 FAR1 81-170 aa PF21056 ZSWIM1-3_RNaseH-like 238-357 aa PF10551 MULE 274-368 aa
XP_057767245.1
735 aa
N
1
368
735
FAR1
ZSWIM1-3_RNaseH-like
MULE
C
PF03101 FAR1 81-170 aa PF21056 ZSWIM1-3_RNaseH-like 238-357 aa PF10551 MULE 274-368 aa
XP_057767246.1
735 aa
N
1
368
735
FAR1
ZSWIM1-3_RNaseH-like
MULE
C
PF03101 FAR1 81-170 aa PF21056 ZSWIM1-3_RNaseH-like 238-357 aa PF10551 MULE 274-368 aa
XP_057767247.1
735 aa
N
1
368
735
FAR1
ZSWIM1-3_RNaseH-like
MULE
C
PF03101 FAR1 81-170 aa PF21056 ZSWIM1-3_RNaseH-like 238-357 aa PF10551 MULE 274-368 aa
XP_057767248.1
735 aa
N
1
368
735
FAR1
ZSWIM1-3_RNaseH-like
MULE
C
PF03101 FAR1 81-170 aa PF21056 ZSWIM1-3_RNaseH-like 238-357 aa PF10551 MULE 274-368 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057767244.1 Pfam PF03101 FAR1 Domain 81 170 1.9e-16 61.3 FAR1 DNA-binding domain
XP_057767244.1 Pfam PF21056 ZSWIM1-3_RNaseH-like Domain 238 357 1.1e-11 45.5 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
XP_057767244.1 Pfam PF10551 MULE Domain 274 368 1.1e-27 96.9 MULE transposase domain
XP_057767245.1 Pfam PF03101 FAR1 Domain 81 170 1.9e-16 61.3 FAR1 DNA-binding domain
XP_057767245.1 Pfam PF21056 ZSWIM1-3_RNaseH-like Domain 238 357 1.1e-11 45.5 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
XP_057767245.1 Pfam PF10551 MULE Domain 274 368 1.1e-27 96.9 MULE transposase domain
XP_057767246.1 Pfam PF03101 FAR1 Domain 81 170 1.9e-16 61.3 FAR1 DNA-binding domain
XP_057767246.1 Pfam PF21056 ZSWIM1-3_RNaseH-like Domain 238 357 1.1e-11 45.5 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
XP_057767246.1 Pfam PF10551 MULE Domain 274 368 1.1e-27 96.9 MULE transposase domain
XP_057767247.1 Pfam PF03101 FAR1 Domain 81 170 1.9e-16 61.3 FAR1 DNA-binding domain
XP_057767247.1 Pfam PF21056 ZSWIM1-3_RNaseH-like Domain 238 357 1.1e-11 45.5 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
XP_057767247.1 Pfam PF10551 MULE Domain 274 368 1.1e-27 96.9 MULE transposase domain
XP_057767248.1 Pfam PF03101 FAR1 Domain 81 170 1.9e-16 61.3 FAR1 DNA-binding domain
XP_057767248.1 Pfam PF21056 ZSWIM1-3_RNaseH-like Domain 238 357 1.1e-11 45.5 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
XP_057767248.1 Pfam PF10551 MULE Domain 274 368 1.1e-27 96.9 MULE transposase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA
XM_057911265.1
CTTTACTAATTAATTTAATTTGAACTAGTATACCAGACTATATGTATAACCCATGCAATCTCATTATTTATTGATTATTATTTTTAACATTAAAAATAATTTTACGAGACCAACTCGTATAAAATATTATTTTTGTAAACAAGACATTTATTTATGTTAAAATAAAGAAAGTCACATGATTTAAAAACAATTAAAAAAAAATAAAGAAATCCACATTCGTAAGAGAGAGAATTAGCAATCTGCTCTCATCTCTGTCTCTC...
XM_057911263.1
GATTTAAAAACAATTAAAAAAAAATAAAGAAATCCACATTCGTAAGAGAGAGAATTAGCAATCTGCTCTCATCTCTGTCTCTCACATTCGCCCCTTCTCTCTGCAGCGCATCTCCTCTTCTGATGAGGGCACGAAGTTTGAACAGACTTAACTATCCATTAATGTGAAACTAAGAATGGAAATTGAAGAACAGAGCAGTAGCAATCCAAAAGGTGATGATTTTGAAGAGGAGAGAGATCAATCTAATACCAACAAAGAAC...

CDS

5 records

下载 CDS FASTA
LOC130987658
ATGGAAATTGAAGAACAGAGCAGTAGCAATCCAAAAGGTGATGATTTTGAAGAGGAGAGAGATCAATCTAATACCAACAAAGAACAGCCTGCTGTAGTTGTTTTTGACGACTTTGCTGATGATTATGACGAGTCTCGTGCTGAAAAAAAACAAAGTAATCTTCTCAATGAAGGTGATATTACATGTTTGTCTGGTTCTTTAGTGGGTCTTAAGAGAGAGAAAGTTGAAGATTTATATGACATATATTGCAATCATGCTCA...
LOC130987658
ATGGAAATTGAAGAACAGAGCAGTAGCAATCCAAAAGGTGATGATTTTGAAGAGGAGAGAGATCAATCTAATACCAACAAAGAACAGCCTGCTGTAGTTGTTTTTGACGACTTTGCTGATGATTATGACGAGTCTCGTGCTGAAAAAAAACAAAGTAATCTTCTCAATGAAGGTGATATTACATGTTTGTCTGGTTCTTTAGTGGGTCTTAAGAGAGAGAAAGTTGAAGATTTATATGACATATATTGCAATCATGCTCA...

Protein

5 records

下载 Protein FASTA
XP_057767244.1
MEIEEQSSSNPKGDDFEEERDQSNTNKEQPAVVVFDDFADDYDESRAEKKQSNLLNEGDITCLSGSLVGLKREKVEDLYDIYCNHAHEVGFRVRRSSSKYNVAGVMVQKWMVCSCEGIRKDRTSSSKSEGKNRATCITRTNCKASLKIKLNADGLYEIFFHNTEHNHTLSRSYMHHPQRLADIEKDIVIEDMISSEMRAVDSLRYMGHDVGGEHVKINAIEGGDAQILIDNLYQQGDEDHEFFFRVKLDEDGRLCNIFWR...
XP_057767245.1
MEIEEQSSSNPKGDDFEEERDQSNTNKEQPAVVVFDDFADDYDESRAEKKQSNLLNEGDITCLSGSLVGLKREKVEDLYDIYCNHAHEVGFRVRRSSSKYNVAGVMVQKWMVCSCEGIRKDRTSSSKSEGKNRATCITRTNCKASLKIKLNADGLYEIFFHNTEHNHTLSRSYMHHPQRLADIEKDIVIEDMISSEMRAVDSLRYMGHDVGGEHVKINAIEGGDAQILIDNLYQQGDEDHEFFFRVKLDEDGRLCNIFWR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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