Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000120`

染色体: Chr06 坐标: 849070-852407 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000120`
名称	SmilChr06G000120
描述	uncharacterized SmilChr06G000120
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	849070 - 852407 / `+`

ID 对照

NCBI Gene ID	`LOC130987665`
GeneID	`130987665`
locus_tag	`-`
NCBI Name	`LOC130987665`
原始查询	`LOC130987665`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	tRNA-thr(GGU) m(6)t(6)A37 methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:828916]; symbol=AT4G28020; hit=AT4G28020; species=arabidopsis; confidence=high
产物	tRNA-thr(GGU) m(6)t(6)A37 methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:828916]; symbol=AT4G28020; hit=AT4G28020; species=arabidopsis; confidence=high
Arabidopsis	`AT4G28020` (AT4G28020) tRNA-thr(GGU) m(6)t(6)A37 methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:828916] identity=63; qcov=0.946; evalue=1.86e-160; confidence=high
Rice	`Os09g0428900` - identity=58.8; qcov=0.894; evalue=2.38e-138; confidence=high
GO	GO:0016430 (GO:0016430)
KEGG	-
Pfam	PF01980 (TrmO_N)
InterPro	-
eggNOG	-
NR	GeneID:130987665

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057767253.1`
2	Cytoplasm	细胞质	0.60000	`XP_057767253.1`
3	Endoplasmic reticulum	内质网	0.20000	`XP_057767253.1`
4	Peroxisome	过氧化物酶体	0.20000	`XP_057767253.1`
5	Nucleus	细胞核	0.00000	`XP_057767253.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:849383`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B119,B129,B31,B73,B83
`Chr6:849424`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr6:850587`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B101,B103,B49,B94,C13
`Chr6:850840`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C21
`Chr6:851170`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A21,B17,C15,C71
`Chr6:851311`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A9,C24,C83
`Chr6:851856`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr6:851895`	`G`	`GA`	1bp_insertion	frameshift_variant	4	B19,B42,B43,C1
`Chr6:851895`	`G`	`GA`	1bp_insertion	CDS_variant	4	B19,B42,B43,C1
`Chr6:851898`	`AG`	`A`	1bp_deletion	frameshift_variant	4	B19,B42,B43,C1
`Chr6:851898`	`AG`	`A`	1bp_deletion	CDS_variant	4	B19,B42,B43,C1
`Chr6:851902`	`GC`	`G`	1bp_deletion	frameshift_variant	4	B19,B42,B43,C1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767253.1

389 aa

194

389

TrmO_N

PF01980 TrmO_N 98-236 aa

XP_057767254.1

386 aa

193

386

TrmO_N

PF01980 TrmO_N 98-236 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767253.1`	Pfam	`PF01980`	TrmO_N	Domain	98	236	1.5e-45	155.1	tRNA-methyltransferase O N-terminal domain
`XP_057767254.1`	Pfam	`PF01980`	TrmO_N	Domain	98	236	1.6e-45	155.0	tRNA-methyltransferase O N-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911271.1
GGAACATAATTTTATATTTTTAATATTTATTAGTAATTGTTATGAATTTATTGTATAAATATATAATGTTGATATCAGGAAAAAAGAAGAAAAAAAAAAAGCGATTGACTAAGAGATAACCTTACTATATTTATTTATTAAAAATTTAAAACTAATCATTGATTTCTAAATTAAGTAAACAAGCTTAATTTAGAAAAGAGAAAGAGGAAAAAAGGAAAAGGAGAAGACGAAGGAGGCGCAGGAGTTGGTTGCGAACTCGA...

XM_057911270.1
TAAGTAAACAAGCTTAATTTAGAAAAGAGAAAGAGGAAAAAAGGAAAAGGAGAAGACGAAGGAGGCGCAGGAGTTGGTTGCGAACTCGAGCAAAGTAGTGTTGCCGATCATCGATGGGCGGCGGCGTGAAATCGCAATGGCTCGCGCTCTCAATCACTTTCGCATTGGCTACTCTGTCTGCTTCCACCGCCATCTCCCTTTATTTATGGAGGAAGAAATCGAAGCCGGATTGTCCAAACGACGAGAAAATCCATGAGCTT...

CDS

2 records

下载 CDS FASTA

LOC130987665
ATGGGCGGCGGCGTGAAATCGCAATGGCTCGCGCTCTCAATCACTTTCGCATTGGCTACTCTGTCTGCTTCCACCGCCATCTCCCTTTATTTATGGAGGAAGAAATCGAAGCCGGATTGTCCAAACGACGAGAAAATCCATGAGCTTGAAGCCTCCTTAAAGTGCGCTCTGGACAAGTGCGCAGCTGAAAGACGAGGCCGCACTAGGGCTCAGAAGGCTTTGAGGGAGGCATTGAGCAAGTCCAGTTATGACAAGGTTGA...

Protein

2 records

下载 Protein FASTA

XP_057767253.1
MGGGVKSQWLALSITFALATLSASTAISLYLWRKKSKPDCPNDEKIHELEASLKCALDKCAAERRGRTRAQKALREALSKSSYDKVESTSYPMAPIGVVRSCFSTRNGTPRQPLLVPLAKASLMFDPARVPQASLEGLEGYSHCWIIYVFHLNTDIEKLWKHPSQSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKLEAVHQHTVLLSGVDLVDGTPVLDIKPYLPYCDSIHGAIVPDWVKVDNVLAIASVNFS...

XP_057767254.1
MGGGVKSQWLALSITFALATLSASTAISLYLWRKKSKPDCPNDEKIHELEASLKCALDKCAAERRGRTRAQKALREALSKSSYDKVESTSYPMAPIGVVRSCFSTRNGTPRQPLLVPLAKASLMFDPARVPQASLEGLEGYSHCWIIYVFHLNTDIEKLWKHPSQSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKLEAVHQHTVLLSGVDLVDGTPVLDIKPYLPYCDSIHGAIVPDWVKVDNVLAIASVNFS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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