当前解析结果
SmilChr06G000121| 统一新 Gene ID | SmilChr06G000121 |
|---|---|
| 名称 | SmilChr06G000121 |
| 描述 | diacylglycerol kinase 4-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 852928 - 859830 / + |
| NCBI Gene ID | LOC130987666 |
|---|---|
| GeneID | 130987666 |
| locus_tag | - |
| NCBI Name | LOC130987666 |
| 原始查询 | LOC130987666 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | diacylglycerol kinase 4-like |
| 产物 | diacylglycerol kinase 4-like |
| Arabidopsis | AT5G57690 (DGK4)diacylglycerol kinase 4 [Source:NCBI gene (formerly Entrezgene);Acc:835876] identity=65.9; qcov=0.957; evalue=0; confidence=high |
| Rice | Os02g0787800- identity=61; qcov=1; evalue=0; confidence=high |
| GO | GO:0004143 (ATP-dependent diacylglycerol kinase activity); GO:0007205 (GO:0007205) |
| KEGG | smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00609 (DAGK_acc); PF00781 (DAGK_cat) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987666 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057767256.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057767256.1 |
| 3 | Cell membrane | 细胞膜 | 0.40000 | XP_057767256.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057767256.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057767256.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:853376 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C16 |
Chr6:853475 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr6:854895 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B65,C35,D11 |
Chr6:856300 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr6:857615 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr6:857653 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr6:858672 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,B101,D4 |
Chr6:858916 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057767256.1PF00781
DAGK_cat 87-224 aa
PF00609
DAGK_acc 279-456 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767256.1 |
Pfam | PF00781 |
DAGK_cat | Family | 87 | 224 | 1.5e-23 | 83.5 | Diacylglycerol kinase catalytic domain |
XP_057767256.1 |
Pfam | PF00609 |
DAGK_acc | Family | 279 | 456 | 2e-43 | 149.2 | Diacylglycerol kinase accessory domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。