Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002860`

染色体: Chr01 坐标: 47170660-47178450 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002860`
名称	SmilChr01G002860
描述	uncharacterized protein At5g08430-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	47170660 - 47178450 / `+`

ID 对照

NCBI Gene ID	`LOC130987672`
GeneID	`130987672`
locus_tag	`-`
NCBI Name	`LOC130987672`
原始查询	`LOC130987672`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SWIB/MDM2 and Plus-3 and GYF domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:830742]; symbol=AT5G08430; hit=AT5G08430; species=arabidopsis; confidence=medium
产物	SWIB/MDM2 and Plus-3 and GYF domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:830742]; symbol=AT5G08430; hit=AT5G08430; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G08430` (AT5G08430) SWIB/MDM2 and Plus-3 and GYF domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:830742] identity=48.6; qcov=0.536; evalue=1.53e-101; confidence=medium
Rice	`Os01g0884500` - identity=33.2; qcov=0.644; evalue=5.99e-49; confidence=low
GO	GO:0003677 (DNA binding); GO:0005515 (protein binding)
KEGG	-
Pfam	PF02201 (SWIB); PF02213 (GYF); PF03126 (Plus-3); PF25980 (NERD_plant)
InterPro	-
eggNOG	-
NR	GeneID:130987672

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057767265.1`
2	Chromosome	染色体	0.00000	`XP_057767265.1`
3	Centromere	着丝粒	0.00000	`XP_057767265.1`
4	Chromatin	染色质	0.00000	`XP_057767265.1`
5	Telomere	端粒	0.00000	`XP_057767265.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:47171597`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr1:47171640`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr1:47171675`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:47171800`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B14,B15,C26,C77
`Chr1:47172055`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B131,B30,C16
`Chr1:47176622`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr1:47176810`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr1:47177091`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B131,B30,C16
`Chr1:47177164`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr1:47178131`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr1:47178206`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B91,C57
`Chr1:47178209`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767265.1

653 aa

326

653

SWIB

Plus-3

NERD_plant

GYF

PF02201 SWIB 41-112 aa PF03126 Plus-3 165-265 aa PF25980 NERD_plant 288-336 aa PF02213 GYF 597-637 aa

XP_057767272.1

652 aa

326

652

SWIB

Plus-3

NERD_plant

GYF

PF02201 SWIB 41-112 aa PF03126 Plus-3 165-265 aa PF25980 NERD_plant 288-336 aa PF02213 GYF 596-636 aa

XP_057767280.1

650 aa

325

650

SWIB

Plus-3

NERD_plant

GYF

PF02201 SWIB 41-112 aa PF03126 Plus-3 165-265 aa PF25980 NERD_plant 288-336 aa PF02213 GYF 594-634 aa

XP_057767289.1

649 aa

324

649

SWIB

Plus-3

NERD_plant

GYF

PF02201 SWIB 41-112 aa PF03126 Plus-3 165-265 aa PF25980 NERD_plant 288-336 aa PF02213 GYF 593-633 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767265.1`	Pfam	`PF02201`	SWIB	Domain	41	112	4.1e-10	40.0	SWIB/MDM2 domain
`XP_057767265.1`	Pfam	`PF03126`	Plus-3	Domain	165	265	3.2e-12	47.6	Plus-3 domain
`XP_057767265.1`	Pfam	`PF25980`	NERD_plant	Domain	288	336	9.7e-19	67.6	Plant NERD domain
`XP_057767265.1`	Pfam	`PF02213`	GYF	Domain	597	637	2.9e-12	46.8	GYF domain
`XP_057767272.1`	Pfam	`PF02201`	SWIB	Domain	41	112	4.1e-10	40.0	SWIB/MDM2 domain
`XP_057767272.1`	Pfam	`PF03126`	Plus-3	Domain	165	265	3.2e-12	47.6	Plus-3 domain
`XP_057767272.1`	Pfam	`PF25980`	NERD_plant	Domain	288	336	9.6e-19	67.7	Plant NERD domain
`XP_057767272.1`	Pfam	`PF02213`	GYF	Domain	596	636	2.9e-12	46.8	GYF domain
`XP_057767280.1`	Pfam	`PF02201`	SWIB	Domain	41	112	4.1e-10	40.0	SWIB/MDM2 domain
`XP_057767280.1`	Pfam	`PF03126`	Plus-3	Domain	165	265	3.2e-12	47.6	Plus-3 domain
`XP_057767280.1`	Pfam	`PF25980`	NERD_plant	Domain	288	336	9.6e-19	67.7	Plant NERD domain
`XP_057767280.1`	Pfam	`PF02213`	GYF	Domain	594	634	2.9e-12	46.8	GYF domain
`XP_057767289.1`	Pfam	`PF02201`	SWIB	Domain	41	112	4.1e-10	40.0	SWIB/MDM2 domain
`XP_057767289.1`	Pfam	`PF03126`	Plus-3	Domain	165	265	3.2e-12	47.6	Plus-3 domain
`XP_057767289.1`	Pfam	`PF25980`	NERD_plant	Domain	288	336	9.4e-19	67.7	Plant NERD domain
`XP_057767289.1`	Pfam	`PF02213`	GYF	Domain	593	633	2.9e-12	46.8	GYF domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057911282.1
AAAAATTGAATATCTATAACCGAAACCCCCTCAAAAATTACGCACCCTACTCACCGCCTGCTACCCACCGCCCCCCGCCGCCCCTGTCTGTTATCCCTAGAAGCCGCCGCTGACTCGACTCAGCCGTGGATCAGGGCGCTGCCGCAGCGGCGGGTGATTCTCGTGTCTCTCTGACTTCTCTTCCCCGGGGCAGCAGACCAGCAGCTCAGTCCCGTGGCGTCCTGCGCCACCTCCGAGCTCCGGCGCTCAGCCTCTTCTCT...

XM_057911289.1
AAAAATTGAATATCTATAACCGAAACCCCCTCAAAAATTACGCACCCTACTCACCGCCTGCTACCCACCGCCCCCCGCCGCCCCTGTCTGTTATCCCTAGAAGCCGCCGCTGACTCGACTCAGCCGTGGATCAGGGCGCTGCCGCAGCGGCGGGTGATTCTCGTGTCTCTCTGACTTCTCTTCCCCGGGGCAGCAGACCAGCAGCTCAGTCCCGTGGCGTCCTGCGCCACCTCCGAGCTCCGGCGCTCAGCCTCTTCTCT...

CDS

4 records

下载 CDS FASTA

LOC130987672
ATGAAAGACACCTTTTGGGTGGGAGACTCCAGTTTACAGTCGCCTGTTAGCCCTGTTCCTAAGAAAAGGAAGAGAAGAGTTGGGAAAAGAAAAATCGAGTTTGTTGGATGGGGTTCTAGGCCTTTAATTGAATTTCTTGAAGCAATTGGTAAGGATACAAGGGAAAAGCACCCGCGACAGGAGGTGGCAGCATTCATCAGCAAGTACATAAATGATAAAGGTCTTACTAGTGCAGAAAAGAAGAAGAAAGTCCTTTGTGA...

Protein

4 records

下载 Protein FASTA

XP_057767265.1
MKDTFWVGDSSLQSPVSPVPKKRKRRVGKRKIEFVGWGSRPLIEFLEAIGKDTREKHPRQEVAAFISKYINDKGLTSAEKKKKVLCDERLFALFGKKSMSRIKVFDMLEEHFAENHNDSDDDFLDSSDEDYGEKDSSQVKKIPTGQMKKVLKTPKSCYAAVTPENIKLIYLKRSVIQDLLKVPESFEFKVVGSFVRLKSDPNDIYQKNRFQLQQVTGIEKISGTGDADIETHLLRVSNFFKGVDICMLSDDNFTKEEVED...

XP_057767272.1
MKDTFWVGDSSLQSPVSPVPKKRKRRVGKRKIEFVGWGSRPLIEFLEAIGKDTREKHPRQEVAAFISKYINDKGLTSAEKKKKVLCDERLFALFGKKSMSRIKVFDMLEEHFAENHNDSDDDFLDSSDEDYGEKDSSQVKKIPTGQMKKVLKTPKSCYAAVTPENIKLIYLKRSVIQDLLKVPESFEFKVVGSFVRLKSDPNDIYQKNRFQLQQVTGIEKISGTGDADIETHLLRVSNFFKGVDICMLSDDNFTKEEVED...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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