当前解析结果
SmilChr06G000131| 统一新 Gene ID | SmilChr06G000131 |
|---|---|
| 名称 | SmilChr06G000131 |
| 描述 | probable xyloglucan endotransglucosylase/hydrolase protein 23 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 929384 - 931034 / - |
| NCBI Gene ID | LOC130987678 |
|---|---|
| GeneID | 130987678 |
| locus_tag | - |
| NCBI Name | LOC130987678 |
| 原始查询 | LOC130987678 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable xyloglucan endotransglucosylase/hydrolase protein 23 |
| 产物 | probable xyloglucan endotransglucosylase/hydrolase protein 23 |
| Arabidopsis | AT4G25810 (XTR6)xyloglucan endotransglycosylase 6 [Source:NCBI gene (formerly Entrezgene);Acc:828686] identity=73.3; qcov=0.972; evalue=6.95e-158; confidence=high |
| Rice | Os06g0697000 (OsXTH10)- identity=66.4; qcov=0.972; evalue=1.76e-144; confidence=high |
| GO | GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005618 (cell wall); GO:0010411 (xyloglucan metabolic process); GO:0016762 (xyloglucan:xyloglucosyl transferase activity); GO:0042546 (cell wall biogenesis); GO:0048046 (apoplast) |
| KEGG | smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00722 (Glyco_hydro_16); PF06955 (XET_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987678 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell wall | 细胞壁 | 0.80000 | XP_057767271.1 |
| 2 | Secreted | 分泌到胞外 | 0.80000 | XP_057767271.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057767271.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057767271.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057767271.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:929858 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B123,B45 |
Chr6:929934 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B27,D11 |
Chr6:929959 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B27,B38,B39,D11 |
Chr6:930061 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B127,C1 |
Chr6:930090 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:930091 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B113,B130,B48 |
Chr6:930242 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B112,B94,B95,C17,C77 |
Chr6:930245 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B103,B36,B49,B62,C7 |
Chr6:930248 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr6:930263 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C5,C73,D9 |
Chr6:930347 |
G |
GAA |
2bp_insertion | frameshift_variant | 33 | A10,A20,A25,A9,B1,B11,B113,B120,B125,B128,B138,B29,B30,B38,B39,B47,B5,B58,B7,B90,B92,B97,C10,C16,C19,C20,C31,C44,C45,C47,C57,C63,C87 |
Chr6:930519 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767271.1PF00722
Glyco_hydro_16 24-202 aa
PF06955
XET_C 235-279 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767271.1 |
Pfam | PF00722 |
Glyco_hydro_16 | Domain | 24 | 202 | 1.1e-67 | 227.6 | Glycosyl hydrolases family 16 |
XP_057767271.1 |
Pfam | PF06955 |
XET_C | Family | 235 | 279 | 1e-21 | 77.1 | Xyloglucan endo-transglycosylase (XET) C-terminus |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。