Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000135`

染色体: Chr06 坐标: 952510-954550 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000135`
名称	SmilChr06G000135
描述	xyloglucan endotransglucosylase protein 7-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	952510 - 954550 / `+`

ID 对照

NCBI Gene ID	`LOC130987681`
GeneID	`130987681`
locus_tag	`-`
NCBI Name	`LOC130987681`
原始查询	`LOC130987681`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	xyloglucan endotransglucosylase protein 7-like
产物	xyloglucan endotransglucosylase protein 7-like
Arabidopsis	`AT5G57560` (TCH4) Xyloglucan endotransglucosylase/hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835860] identity=60.7; qcov=0.834; evalue=5.85e-118; confidence=high
Rice	`Os06g0697000` (OsXTH10) - identity=54.9; qcov=0.838; evalue=4.77e-109; confidence=high
GO	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005618 (cell wall); GO:0010411 (xyloglucan metabolic process); GO:0016762 (xyloglucan:xyloglucosyl transferase activity); GO:0042546 (cell wall biogenesis); GO:0048046 (apoplast)
KEGG	-
Pfam	PF00722 (Glyco_hydro_16); PF06955 (XET_C)
InterPro	-
eggNOG	-
NR	GeneID:130987681

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	0.80000	`XP_057767273.1`
2	Vacuole	液泡	0.20000	`XP_057767273.1`
3	Nucleus	细胞核	0.00000	`XP_057767273.1`
4	Chromosome	染色体	0.00000	`XP_057767273.1`
5	Centromere	着丝粒	0.00000	`XP_057767273.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:952732`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B119,B46
`Chr6:952741`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:952751`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B17,C15
`Chr6:952796`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	C74,C86
`Chr6:952796`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C74,C86
`Chr6:952800`	`T`	`TAA`	2bp_insertion	frameshift_variant	22	A18,A2,A23,A24,B105,B109,B12,B32,B36,B4,B62,B89,C13,C26,C31,C50,C6,C61,C7,C72,C83,C9
`Chr6:953007`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr6:953059`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr6:953066`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr6:953067`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr6:953083`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr6:953101`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767273.1

320 aa

160

320

Glyco_hydro_16

XET_C

PF00722 Glyco_hydro_16 61-240 aa PF06955 XET_C 280-317 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767273.1`	Pfam	`PF00722`	Glyco_hydro_16	Domain	61	240	2.5e-62	210.1	Glycosyl hydrolases family 16
`XP_057767273.1`	Pfam	`PF06955`	XET_C	Family	280	317	2.4e-16	60.0	Xyloglucan endo-transglycosylase (XET) C-terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057911290.1
GAGTTGCAATACTAATGGCTGAAAAACTTTTCTTCAATTTCTATGAAACACAAAAACATCAAACAGAAAGAAGAAATTAAAGATTGATGTTTTTTTTTTCTTTTGACTAAAAATTAAAGATTGATGTTATAATGATAGTTGAAATGCAAATTTGTGTTTGAAGAAATCGAACGTTATGCCACCGAGGAACAACAACCAATTCCTACCCTACTTGGCATTCATCGTCTTCTCCGCCATCTTCGTCTTCAAGGTTTCTTACC...

CDS

1 records

下载 CDS FASTA

LOC130987681
ATGCCACCGAGGAACAACAACCAATTCCTACCCTACTTGGCATTCATCGTCTTCTCCGCCATCTTCGTCTTCAAGGTTTCTTACCTTTTTTCACCTACCGATTATCAAATTCAAATATATACAAATTATACGACGCTGATGATAATAAATTTCAAGCAATCATCAAACAATGGAACGTTTCACGAGCATTTCATGATGTCGTGGGGCGAGGAGCACGCACGCGTGCTGAAGGAGGGGGAGCTGCTGACGTTGTCCCTCGA...

Protein

1 records

下载 Protein FASTA

XP_057767273.1
MPPRNNNQFLPYLAFIVFSAIFVFKVSYLFSPTDYQIQIYTNYTTLMIINFKQSSNNGTFHEHFMMSWGEEHARVLKEGELLTLSLDKKSGSGFQSRKELLFGKVDMQMKLVPGNSAGTVTTYYFSSHGDFHDEIDFEFLGNSSGNPYTLHTNIFSQGKGDREQQFFLWFDPTADFHTYSILWNPKCVIWLVDNIAIREFKNIEHLGVPYLKDQPMRIYSSLWNAEDWATQHGLIKTDWSLAPFTAAYRNYSLDGCVWSR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器