当前解析结果
SmilChr06G000148| 统一新 Gene ID | SmilChr06G000148 |
|---|---|
| 名称 | SmilChr06G000148 |
| 描述 | VIN3-like protein 2 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 1041604 - 1045964 / + |
| NCBI Gene ID | LOC130987691 |
|---|---|
| GeneID | 130987691 |
| locus_tag | - |
| NCBI Name | LOC130987691 |
| 原始查询 | LOC130987691 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | VIN3-like protein 2 |
| 产物 | VIN3-like protein 2 |
| Arabidopsis | AT4G30200 (VEL1)vernalization5/VIN3-like protein [Source:NCBI gene (formerly Entrezgene);Acc:829143] identity=46.8; qcov=1.06; evalue=0; confidence=high |
| Rice | Os08g0220600 (OsVIL4)- identity=39.1; qcov=1.01; evalue=1.47e-151; confidence=medium |
| GO | GO:0005515 (protein binding); GO:0010048 (vernalization response); GO:0040029 (epigenetic regulation of gene expression) |
| KEGG | - |
| Pfam | PF07227 (PHD_Oberon); PF23376 (Fn3_VIN3); PF23380 (VIN3_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987691 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057767286.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057767286.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057767286.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057767286.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057767286.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:1043662 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:1043714 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr6:1043747 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B91 |
Chr6:1043876 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr6:1044004 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B27,B73,C6 |
Chr6:1044727 |
T |
TCC |
2bp_insertion | frameshift_variant | 105 | A10,A14,A15,A16,A18,A19,A20,A22,A3,A7,A9,B102,B105,B109,B112,B118,B12,B122,B123,B124,B127,B128,B129,B131,B134,B136,B137,B138,B139,B14,B2,B22,B23,B25,B3,B30,B31,B32,B35,B37,B4,B40,B41,B42,B43,B44,B49,B51,B53,B54,B55,B57,B58,B65,B66,B70,B78,B82,B85,B86,B89,B90,B91,B92,B95,B98,C10,C14,C15,C16,C17,C18,C23,C25,C27,C28,C31,C33,C35,C38,C4,C41,C43,C47,C48,C5,C54,C57,C63,C64,C66,C70,C77,C78,C80,C81,C83,C85,C86,D1,D10,D11,D4,D5,D7 |
Chr6:1044821 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B33 |
Chr6:1044989 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B6,B63,B81,C42,C67 |
Chr6:1045011 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr6:1045035 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr6:1045067 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr6:1045182 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767286.1PF07227
PHD_Oberon 131-251 aa
PF23376
Fn3_VIN3 358-445 aa
PF23380
VIN3_C 620-692 aa
XP_057767287.1PF07227
PHD_Oberon 118-238 aa
PF23376
Fn3_VIN3 345-432 aa
PF23380
VIN3_C 607-679 aa
XP_057767288.1PF07227
PHD_Oberon 131-251 aa
PF23376
Fn3_VIN3 335-422 aa
PF23380
VIN3_C 597-669 aa
XP_057767290.1PF07227
PHD_Oberon 118-238 aa
PF23376
Fn3_VIN3 322-409 aa
PF23380
VIN3_C 584-656 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767286.1 |
Pfam | PF07227 |
PHD_Oberon | Family | 131 | 251 | 1.3e-33 | 116.4 | PHD - plant homeodomain finger protein |
XP_057767286.1 |
Pfam | PF23376 |
Fn3_VIN3 | Domain | 358 | 445 | 3.2e-31 | 108.0 | VIN3-like, fibronectin type-III domain |
XP_057767286.1 |
Pfam | PF23380 |
VIN3_C | Domain | 620 | 692 | 7.4e-37 | 125.7 | VIN3-like, C-terminal domain |
XP_057767287.1 |
Pfam | PF07227 |
PHD_Oberon | Family | 118 | 238 | 1.2e-33 | 116.4 | PHD - plant homeodomain finger protein |
XP_057767287.1 |
Pfam | PF23376 |
Fn3_VIN3 | Domain | 345 | 432 | 3.1e-31 | 108.1 | VIN3-like, fibronectin type-III domain |
XP_057767287.1 |
Pfam | PF23380 |
VIN3_C | Domain | 607 | 679 | 7.3e-37 | 125.7 | VIN3-like, C-terminal domain |
XP_057767288.1 |
Pfam | PF07227 |
PHD_Oberon | Family | 131 | 251 | 1.2e-33 | 116.5 | PHD - plant homeodomain finger protein |
XP_057767288.1 |
Pfam | PF23376 |
Fn3_VIN3 | Domain | 335 | 422 | 3.7e-31 | 107.8 | VIN3-like, fibronectin type-III domain |
XP_057767288.1 |
Pfam | PF23380 |
VIN3_C | Domain | 597 | 669 | 7.1e-37 | 125.8 | VIN3-like, C-terminal domain |
XP_057767290.1 |
Pfam | PF07227 |
PHD_Oberon | Family | 118 | 238 | 1.2e-33 | 116.5 | PHD - plant homeodomain finger protein |
XP_057767290.1 |
Pfam | PF23376 |
Fn3_VIN3 | Domain | 322 | 409 | 3.6e-31 | 107.9 | VIN3-like, fibronectin type-III domain |
XP_057767290.1 |
Pfam | PF23380 |
VIN3_C | Domain | 584 | 656 | 6.9e-37 | 125.8 | VIN3-like, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。