当前解析结果
SmilChr06G000153| 统一新 Gene ID | SmilChr06G000153 |
|---|---|
| 名称 | SmilChr06G000153 |
| 描述 | adagio protein 1-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 1070958 - 1075728 / - |
| NCBI Gene ID | LOC130987697 |
|---|---|
| GeneID | 130987697 |
| locus_tag | - |
| NCBI Name | LOC130987697 |
| 原始查询 | LOC130987697 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | adagio protein 1-like |
| 产物 | adagio protein 1-like |
| Arabidopsis | AT5G57360 (ZTL)Galactose oxidase/kelch repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835842] identity=81.9; qcov=0.994; evalue=0; confidence=high |
| Rice | Os06g0694000 (OsZTL2)- identity=78.8; qcov=0.941; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0007623 (circadian rhythm); GO:0009637 (response to blue light); GO:0019005 (SCF ubiquitin ligase complex) |
| KEGG | smil04712 (Circadian rhythm - plant - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00646 (F-box); PF00989 (PAS); PF07646 (Kelch_2); PF12937 (F-box-like); PF13426 (PAS_9); PF24681 (Kelch_KLHDC2_KLHL20_DRC7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987697 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057767299.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057767299.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057767299.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057767299.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057767299.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:1071497 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr6:1071498 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C78 |
Chr6:1071509 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B54,C18,C64,C66 |
Chr6:1071515 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:1071746 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B59,B88,C22,C56,C65 |
Chr6:1071751 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr6:1071773 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A1,A3,C73,C8 |
Chr6:1071989 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:1072331 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,C1 |
Chr6:1072334 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:1072549 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:1072637 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767299.1PF00989
PAS 43-161 aa
PF13426
PAS_9 51-161 aa
PF00646
F-box 219-253 aa
PF12937
F-box-like 219-257 aa
PF24681
Kelch_KLHDC2_KLHL20_DRC7 288-482 aa
PF24681
Kelch_KLHDC2_KLHL20_DRC7 447-620 aa
PF07646
Kelch_2 464-514 aa
PF07646
Kelch_2 531-578 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767299.1 |
Pfam | PF00989 |
PAS | Domain | 43 | 161 | 1.4e-08 | 35.5 | PAS fold |
XP_057767299.1 |
Pfam | PF13426 |
PAS_9 | Domain | 51 | 161 | 1.1e-14 | 55.3 | PAS domain |
XP_057767299.1 |
Pfam | PF00646 |
F-box | Domain | 219 | 253 | 2.5e-05 | 24.7 | F-box domain |
XP_057767299.1 |
Pfam | PF12937 |
F-box-like | Domain | 219 | 257 | 5.6e-10 | 39.6 | F-box-like |
XP_057767299.1 |
Pfam | PF24681 |
Kelch_KLHDC2_KLHL20_DRC7 | Repeat | 288 | 482 | 6.2e-57 | 193.1 | KLHDC2/KLHL20/DRC7 Kelch-repeats domain |
XP_057767299.1 |
Pfam | PF24681 |
Kelch_KLHDC2_KLHL20_DRC7 | Repeat | 447 | 620 | 6.2e-57 | 193.1 | KLHDC2/KLHL20/DRC7 Kelch-repeats domain |
XP_057767299.1 |
Pfam | PF07646 |
Kelch_2 | Repeat | 464 | 514 | 6.6e-26 | 89.6 | Kelch motif |
XP_057767299.1 |
Pfam | PF07646 |
Kelch_2 | Repeat | 531 | 578 | 6.6e-26 | 89.6 | Kelch motif |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。