当前解析结果
SmilChr06G000161| 统一新 Gene ID | SmilChr06G000161 |
|---|---|
| 名称 | SmilChr06G000161 |
| 描述 | uncharacterized SmilChr06G000161 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 1127292 - 1131974 / + |
| NCBI Gene ID | LOC130987707 |
|---|---|
| GeneID | 130987707 |
| locus_tag | - |
| NCBI Name | LOC130987707 |
| 原始查询 | LOC130987707 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | guanosine-3',5'-bis (diphosphate) 3'-pyrophosphohydrolase, putative (DUF2215) [Source:NCBI gene (formerly Entrezgene);Acc:839772]; symbol=AT1G28760; hit=AT1G28760; species=arabidopsis; confidence=high |
| 产物 | guanosine-3',5'-bis (diphosphate) 3'-pyrophosphohydrolase, putative (DUF2215) [Source:NCBI gene (formerly Entrezgene);Acc:839772]; symbol=AT1G28760; hit=AT1G28760; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G28760 (AT1G28760)guanosine-3',5'-bis (diphosphate) 3'-pyrophosphohydrolase, putative (DUF2215) [Source:NCBI gene (formerly Entrezgene);Acc:839772] identity=50.1; qcov=0.871; evalue=1.4e-145; confidence=high |
| Rice | Os03g0654500- identity=43.3; qcov=0.847; evalue=1.24e-113; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF10225 (NEMP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987707 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057767320.1 |
| 2 | Nucleus membrane | 核膜 | 0.80000 | XP_057767320.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057767320.1 |
| 4 | Nucleus | 细胞核 | 0.20000 | XP_057767320.1 |
| 5 | Nucleus inner membrane | Nucleus inner membrane | 0.20000 | XP_057767320.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:1127448 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B4,B84,C1 |
Chr6:1127450 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:1128243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr6:1128247 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B102,C43 |
Chr6:1128250 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B68,C39,C79 |
Chr6:1128257 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B102,C43 |
Chr6:1128683 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B62,C53,D7 |
Chr6:1128889 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr6:1128908 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B84,C19,C32,C68,C8 |
Chr6:1128939 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B126,B40,C27,C35,C72 |
Chr6:1128958 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,B53 |
Chr6:1129162 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B101,B14,B26,C37,C86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057767320.1PF10225
NEMP 152-418 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767320.1 |
Pfam | PF10225 |
NEMP | Family | 152 | 418 | 3.5e-45 | 155.3 | NEMP family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。