Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G000161

染色体: Chr06 坐标: 1127292-1131974 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G000161
名称SmilChr06G000161
描述uncharacterized SmilChr06G000161
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向1127292 - 1131974 / +

ID 对照

NCBI Gene IDLOC130987707
GeneID130987707
locus_tag-
NCBI NameLOC130987707
原始查询LOC130987707

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述guanosine-3',5'-bis (diphosphate) 3'-pyrophosphohydrolase, putative (DUF2215) [Source:NCBI gene (formerly Entrezgene);Acc:839772]; symbol=AT1G28760; hit=AT1G28760; species=arabidopsis; confidence=high
产物guanosine-3',5'-bis (diphosphate) 3'-pyrophosphohydrolase, putative (DUF2215) [Source:NCBI gene (formerly Entrezgene);Acc:839772]; symbol=AT1G28760; hit=AT1G28760; species=arabidopsis; confidence=high
ArabidopsisAT1G28760 (AT1G28760)
guanosine-3',5'-bis (diphosphate) 3'-pyrophosphohydrolase, putative (DUF2215) [Source:NCBI gene (formerly Entrezgene);Acc:839772]
identity=50.1; qcov=0.871; evalue=1.4e-145; confidence=high
RiceOs03g0654500
-
identity=43.3; qcov=0.847; evalue=1.24e-113; confidence=medium
GO-
KEGG-
PfamPF10225 (NEMP)
InterPro-
eggNOG-
NRGeneID:130987707

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 1.00000 XP_057767320.1
2 Nucleus membrane 核膜 0.80000 XP_057767320.1
3 Endoplasmic reticulum membrane 内质网膜 0.80000 XP_057767320.1
4 Nucleus 细胞核 0.20000 XP_057767320.1
5 Nucleus inner membrane Nucleus inner membrane 0.20000 XP_057767320.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:1127448 C T EMS_canonical_SNV CDS_variant 3 B4,B84,C1
Chr6:1127450 C T EMS_canonical_SNV CDS_variant 1 B104
Chr6:1128243 G A EMS_canonical_SNV CDS_variant 1 B73
Chr6:1128247 C T EMS_canonical_SNV CDS_variant 2 B102,C43
Chr6:1128250 G A EMS_canonical_SNV CDS_variant 4 A18,B68,C39,C79
Chr6:1128257 C T EMS_canonical_SNV CDS_variant 2 B102,C43
Chr6:1128683 G A EMS_canonical_SNV CDS_variant 3 B62,C53,D7
Chr6:1128889 G A EMS_canonical_SNV CDS_variant 1 B112
Chr6:1128908 C T EMS_canonical_SNV CDS_variant 5 B84,C19,C32,C68,C8
Chr6:1128939 C T EMS_canonical_SNV CDS_variant 5 B126,B40,C27,C35,C72
Chr6:1128958 G A EMS_canonical_SNV CDS_variant 2 B114,B53
Chr6:1129162 C T EMS_canonical_SNV CDS_variant 5 B101,B14,B26,C37,C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057767320.1
504 aa
N
1
252
504
NEMP
C
PF10225 NEMP 152-418 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057767320.1 Pfam PF10225 NEMP Family 152 418 3.5e-45 155.3 NEMP family

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057911337.1
AAATATTACAAAAACGCCCACAGACTTCGCTAATCAAAGCAATAAAGTTTAGAATTTAGCGCGCGCTTATTTTCGAGTCTTCCGATCTTCTCCTTCTTCTCCTTCGTCGCGAAGGAAAACATAAAGTATGGGGGGCTCCGCCGGTGCGACTTCTGCCGCCGTATTGTTTGTTTTGGCTTTGATCTCCGCCGCTTCTATCGCCGCCGATGTGGAAGCAATCTCCGGAAGTAACGTGGAAAATCGTCAAGTAATAAATATCA...

CDS

1 records

下载 CDS FASTA
LOC130987707
ATGGGGGGCTCCGCCGGTGCGACTTCTGCCGCCGTATTGTTTGTTTTGGCTTTGATCTCCGCCGCTTCTATCGCCGCCGATGTGGAAGCAATCTCCGGAAGTAACGTGGAAAATCGTCAAGTAATAAATATCACTCCTGGAGTGCTGGTCGAATCTGTTCCTTCGAAAGATATTGTACGCTGTGCACGTGTCAATGTTTCTGGTCTATCAAGACTGAAACTCGGGAGTTATTCCAGTGCACATAGGATCACTTTGGTCCC...

Protein

1 records

下载 Protein FASTA
XP_057767320.1
MGGSAGATSAAVLFVLALISAASIAADVEAISGSNVENRQVINITPGVLVESVPSKDIVRCARVNVSGLSRLKLGSYSSAHRITLVPSDNIQERSHKKIQICLHRNASLGLCKSENDCWDGIHTGIWSTTISPYEDRFIDVKFVDNLFGSVTISTELEFHRWRLICLAIGFVILLLAPIISSWVPFYYSSSMAIGVCLVVLIVLFQGMKLLPTGRKSALYSTICGLALGAGSFLLNRLSVFVNSVLVNFGISQEMHNPVL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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