Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000162`

染色体: Chr06 坐标: 1132361-1135207 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000162`
名称	SmilChr06G000162
描述	uncharacterized SmilChr06G000162
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	1132361 - 1135207 / `-`

ID 对照

NCBI Gene ID	`LOC130987708`
GeneID	`130987708`
locus_tag	`-`
NCBI Name	`LOC130987708`
原始查询	`LOC130987708`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Polyketide cyclase / dehydrase and lipid transport protein [Source:NCBI gene (formerly Entrezgene);Acc:828138]; symbol=AT4G01650; hit=AT4G01650; species=arabidopsis; confidence=high
产物	Polyketide cyclase / dehydrase and lipid transport protein [Source:NCBI gene (formerly Entrezgene);Acc:828138]; symbol=AT4G01650; hit=AT4G01650; species=arabidopsis; confidence=high
Arabidopsis	`AT4G01650` (AT4G01650) Polyketide cyclase / dehydrase and lipid transport protein [Source:NCBI gene (formerly Entrezgene);Acc:828138] identity=62.9; qcov=0.606; evalue=5.64e-81; confidence=high
Rice	`Os01g0971700` - identity=49.8; qcov=0.661; evalue=2.43e-61; confidence=high
GO	-
KEGG	-
Pfam	PF03364 (Polyketide_cyc)
InterPro	-
eggNOG	-
NR	GeneID:130987708

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057767322.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057767322.1`
3	Chloroplast thylakoid	类囊体	0.20000	`XP_057767322.1`
4	Nucleus	细胞核	0.00000	`XP_057767322.1`
5	Chromosome	染色体	0.00000	`XP_057767322.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:1133042`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B102,B17,B4
`Chr6:1133057`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B49,C87
`Chr6:1133145`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B109,B31,B60,B61,B8
`Chr6:1133199`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C16,C40,C61,C77
`Chr6:1133901`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B136,C46,D9
`Chr6:1133902`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B13,C17,C53
`Chr6:1134049`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr6:1134075`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C17,C53
`Chr6:1134083`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B59,C22

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767322.1

307 aa

154

307

Polyketide_cyc

PF03364 Polyketide_cyc 137-286 aa

XP_057767323.1

307 aa

154

307

Polyketide_cyc

PF03364 Polyketide_cyc 137-286 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767322.1`	Pfam	`PF03364`	Polyketide_cyc	Family	137	286	7.1e-18	65.8	Polyketide cyclase / dehydrase and lipid transport
`XP_057767323.1`	Pfam	`PF03364`	Polyketide_cyc	Family	137	286	7.1e-18	65.8	Polyketide cyclase / dehydrase and lipid transport

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

11 records

下载 cDNA FASTA

XR_009089827.1
ATTTTATATTTTAATTTTTGAATGATTATTCTACACTATATTAGATATAAATATATATTTACTTTATAATTTATTTAATTAAATAATCGAATCCAAATCAAATGGGAAATTCACACACGTTTCAACTATTGAGTGTTGGAGAAGAGGCGTTTTCACGTAGTCGCGTTTCTTGATATCCTAAATAGTAAATCCGTTCACATCCACAATTCTCGGTCTGATCCACCGCCGCCGCTAATCTCCGCCGCCTAAACTACAGTGAA...

XR_009089830.1
ATTTTATATTTTAATTTTTGAATGATTATTCTACACTATATTAGATATAAATATATATTTACTTTATAATTTATTTAATTAAATAATCGAATCCAAATCAAATGGGAAATTCACACACGTTTCAACTATTGAGTGTTGGAGAAGAGGCGTTTTCACGTAGTCGCGTTTCTTGATATCCTAAATAGTAAATCCGTTCACATCCACAATTCTCGGTCTGATCCACCGCCGCCGCTAATCTCCGCCGCCTAAACTACAGTGAA...

CDS

2 records

下载 CDS FASTA

LOC130987708
ATGGCTTCAGTAATCTCTTTTCCTGCAGCTCTGTCATGTGTTTCTACAGATACAATTCCCAAATTATCCACTGCAAAATCCCTCTCAATCAGCAGATGCTCTAATCTGATTGGCTCCTTCACAGTATTGGATGCAGAATCCGCCTTTCTCGCGAAGATACTGAGAAAATTGAAGCCTTATGGTATTTCCACTGTTCACTTTTTCCAACAGAAAAAGCCTTTGGTTGTTTGCCTCTCCTGTTTTGTTGCTAGGGCTTATAT...

Protein

2 records

下载 Protein FASTA

XP_057767322.1
MASVISFPAALSCVSTDTIPKLSTAKSLSISRCSNLIGSFTVLDAESAFLAKILRKLKPYGISTVHFFQQKKPLVVCLSCFVARAYIGGDSEYVDDDDDNGKYTNEDTDESSPDDSFEIEIVKTGNNSRRIRSKVRVQASLQAVWDILTDYESLADFIPGLAVSKLLEKRDNFARLFQIGQQNLAFGLKFDAKGTIDCVEKDLEILPFGQRRDIEFKMVEGDFQLFEGKWSVEQEVKSIAGDLRSVSVDDVEYQTTLVYV...

XP_057767323.1
MASVISFPAALSCVSTDTIPKLSTAKSLSISRCSNLIGSFTVLDAESAFLAKILRKLKPYGISTVHFFQQKKPLVVCLSCFVARAYIGGDSEYVDDDDDNGKYTNEDTDESSPDDSFEIEIVKTGNNSRRIRSKVRVQASLQAVWDILTDYESLADFIPGLAVSKLLEKRDNFARLFQIGQQNLAFGLKFDAKGTIDCVEKDLEILPFGQRRDIEFKMVEGDFQLFEGKWSVEQEVKSIAGDLRSVSVDDVEYQTTLVYV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器