当前解析结果
SmilChr06G000190| 统一新 Gene ID | SmilChr06G000190 |
|---|---|
| 名称 | SmilChr06G000190 |
| 描述 | protein DETOXIFICATION 21-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 1312649 - 1315219 / - |
| NCBI Gene ID | LOC130987738 |
|---|---|
| GeneID | 130987738 |
| locus_tag | - |
| NCBI Name | LOC130987738 |
| 原始查询 | LOC130987738 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein DETOXIFICATION 21-like |
| 产物 | protein DETOXIFICATION 21-like |
| Arabidopsis | AT1G33110 (AT1G33110)MATE efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:840207] identity=53.2; qcov=0.994; evalue=0; confidence=high |
| Rice | Os11g0126100- identity=55.5; qcov=0.964; evalue=9.24e-176; confidence=high |
| GO | GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:0042910 (xenobiotic transmembrane transporter activity); GO:1990961 (xenobiotic detoxification by transmembrane export across the plasma membrane) |
| KEGG | - |
| Pfam | PF01554 (MatE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987738 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057767371.1 |
| 2 | Vacuole | 液泡 | 0.40000 | XP_057767371.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057767371.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057767371.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057767371.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:1312902 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B72,C36 |
Chr6:1313191 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,B68,C12 |
Chr6:1313209 |
C |
CA |
1bp_insertion | frameshift_variant | 4 | B33,B35,B55,C23 |
Chr6:1313209 |
C |
CA |
1bp_insertion | CDS_variant | 4 | B33,B35,B55,C23 |
Chr6:1313243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B118,B64,B85,C67 |
Chr6:1313370 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A25,B76,C22,C64,C66 |
Chr6:1313386 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B98,D2 |
Chr6:1313387 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B98,D2 |
Chr6:1313446 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B45,C74 |
Chr6:1313481 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B10,B11,D2,D5 |
Chr6:1313520 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B7,C51,C85 |
Chr6:1313535 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057767371.1PF01554
MatE 29-189 aa
PF01554
MatE 252-411 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767371.1 |
Pfam | PF01554 |
MatE | Family | 29 | 189 | 1.5e-51 | 175.0 | MatE |
XP_057767371.1 |
Pfam | PF01554 |
MatE | Family | 252 | 411 | 1.5e-51 | 175.0 | MatE |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。