当前解析结果
SmilChr06G000223| 统一新 Gene ID | SmilChr06G000223 |
|---|---|
| 名称 | SmilChr06G000223 |
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 1484076 - 1489123 / - |
| NCBI Gene ID | LOC130987770 |
|---|---|
| GeneID | 130987770 |
| locus_tag | - |
| NCBI Name | LOC130987770 |
| 原始查询 | LOC130987770 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 产物 | putative late blight resistance protein homolog R1B-16 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=28.8; qcov=0.566; evalue=6.31e-49; confidence=low |
| Rice | Os08g0424700 (P0456B03.103)- identity=27.2; qcov=0.517; evalue=9.28e-50; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987770 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057767416.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057767416.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057767416.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057767416.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057767416.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:1484613 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A22,B29,C44 |
Chr6:1484757 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | D10 |
Chr6:1484757 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:1484860 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A16,B12,B50,B89,C5 |
Chr6:1484878 |
CGG |
C |
2bp_deletion | frameshift_variant | 3 | A16,B50,B89 |
Chr6:1484878 |
CGG |
C |
2bp_deletion | CDS_variant | 3 | A16,B50,B89 |
Chr6:1484885 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A23,B138,C37,C62 |
Chr6:1484896 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A16,B50,B89 |
Chr6:1484902 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A16,A23,B50,B89,C10 |
Chr6:1484903 |
TA |
T |
1bp_deletion | frameshift_variant | 8 | A20,A23,B138,B61,B75,B87,C37,C62 |
Chr6:1484906 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A16,B50,B89,C10 |
Chr6:1484907 |
T |
TC |
1bp_insertion | frameshift_variant | 10 | A20,A23,B119,B138,B61,B75,B87,C37,C38,C62 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767416.1PF00931
NB-ARC 156-321 aa
PF00931
NB-ARC 427-577 aa
PF23559
WHD_DRP 662-730 aa
PF23598
LRR_14 825-1024 aa
XP_057767418.1PF00931
NB-ARC 156-321 aa
PF00931
NB-ARC 427-577 aa
PF23559
WHD_DRP 662-730 aa
PF23598
LRR_14 825-1024 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767416.1 |
Pfam | PF00931 |
NB-ARC | Domain | 156 | 321 | 6e-54 | 182.9 | NB-ARC domain |
XP_057767416.1 |
Pfam | PF00931 |
NB-ARC | Domain | 427 | 577 | 6e-54 | 182.9 | NB-ARC domain |
XP_057767416.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 662 | 730 | 8.6e-13 | 48.8 | Disease resistance protein Winged helix domain |
XP_057767416.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 825 | 1024 | 1.5e-14 | 54.3 | Leucine-rich repeat region |
XP_057767418.1 |
Pfam | PF00931 |
NB-ARC | Domain | 156 | 321 | 6e-54 | 182.9 | NB-ARC domain |
XP_057767418.1 |
Pfam | PF00931 |
NB-ARC | Domain | 427 | 577 | 6e-54 | 182.9 | NB-ARC domain |
XP_057767418.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 662 | 730 | 8.6e-13 | 48.8 | Disease resistance protein Winged helix domain |
XP_057767418.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 825 | 1024 | 1.5e-14 | 54.3 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。