Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000271`

染色体: Chr06 坐标: 1830936-1842636 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000271`
名称	SmilChr06G000271
描述	uncharacterized SmilChr06G000271
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	1830936 - 1842636 / `+`

ID 对照

NCBI Gene ID	`LOC130987772`
GeneID	`130987772`
locus_tag	`-`
NCBI Name	`LOC130987772`
原始查询	`LOC130987772`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827979]; symbol=AT4G02480; hit=AT4G02480; species=arabidopsis; confidence=high
产物	AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827979]; symbol=AT4G02480; hit=AT4G02480; species=arabidopsis; confidence=high
Arabidopsis	`AT4G02480` (AT4G02480) AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827979] identity=55.4; qcov=0.956; evalue=0; confidence=high
Rice	`Os07g0672500` (P0470D12.132) - identity=66; qcov=0.554; evalue=0; confidence=medium
GO	GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005741 (mitochondrial outer membrane); GO:0016887 (ATP hydrolysis activity)
KEGG	-
Pfam	PF00004 (AAA); PF00498 (FHA); PF17862 (AAA_lid_3); PF24933 (DUF7751)
InterPro	-
eggNOG	-
NR	GeneID:130987772

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057767420.1`
2	Cytoplasm	细胞质	0.40000	`XP_057767420.1`
3	Nucleus	细胞核	0.20000	`XP_057767420.1`
4	Chromosome	染色体	0.00000	`XP_057767420.1`
5	Centromere	着丝粒	0.00000	`XP_057767420.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:1831282`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B112,C37,D6
`Chr6:1831286`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr6:1831300`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:1831365`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr6:1831387`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B133,C17,C22,C77
`Chr6:1831962`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr6:1832373`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C2,C32,C68,C82
`Chr6:1832446`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr6:1832765`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr6:1833049`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,C39
`Chr6:1833184`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr6:1833391`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,C39

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767420.1

1195 aa

598

1195

FHA

DUF7751

AAA

AAA_lid_3

PF00498 FHA 145-216 aa PF24933 DUF7751 790-851 aa PF00004 AAA 931-1061 aa PF17862 AAA_lid_3 1084-1120 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767420.1`	Pfam	`PF00498`	FHA	Family	145	216	1.5e-05	26.0	FHA domain
`XP_057767420.1`	Pfam	`PF24933`	DUF7751	Domain	790	851	4.2e-19	69.4	Domain of unknown function (DUF7751)
`XP_057767420.1`	Pfam	`PF00004`	AAA	Domain	931	1061	9.5e-40	136.8	ATPase family associated with various cellular activities (AAA)
`XP_057767420.1`	Pfam	`PF17862`	AAA_lid_3	Domain	1084	1120	4.4e-14	52.4	AAA+ lid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057911437.1
ATCTATATAAATAAATATTCTCTCTCTCTCTAAAAAGATAAACGCATTCCAGAAAGAGAAGAGGAAGCTGAAATGGTGTCGACGAGGCGAAGTGGATCTCTGCCGTCGAATAATAGTAAGAGATCATCTTCGCCGTCCGATGATAATCACAATAAACCTTCTTCTCCCAAGCGTCAAAAGGGCGAGAGTCACACCAATAATCCCAAGGCCTCCGAGTCCTCACCGGCGGAGAACCCAAAGGAAATAAGCTCGGCTGATCC...

CDS

1 records

下载 CDS FASTA

LOC130987772
ATGGTGTCGACGAGGCGAAGTGGATCTCTGCCGTCGAATAATAGTAAGAGATCATCTTCGCCGTCCGATGATAATCACAATAAACCTTCTTCTCCCAAGCGTCAAAAGGGCGAGAGTCACACCAATAATCCCAAGGCCTCCGAGTCCTCACCGGCGGAGAACCCAAAGGAAATAAGCTCGGCTGATCCGCCGGAGCTCCCCTCTACCACCGCCGCCGCCGCCGGGGACACAGCTCCTGATGCTGCCGCCTCAGTTTCTGT...

Protein

1 records

下载 Protein FASTA

XP_057767420.1
MVSTRRSGSLPSNNSKRSSSPSDDNHNKPSSPKRQKGESHTNNPKASESSPAENPKEISSADPPELPSTTAAAAGDTAPDAAASVSVATPVVVPEGAAAAVLEKPRSSFTSWKQHQGYETTSPWCKLLTESPQNPTVSVYTTNFLVGSSKQANLLIRESDQTISAFLCSIRLDQRDDKPVAVLESRGSKGCVLVNGKTIKKNTTCDLNSGDEVVFGFLGNHAYIFQQLPYDSVIKTPPPDVQTNIGKFIPVERRGDASAV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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