Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002872`

染色体: Chr01 坐标: 47317702-47319138 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002872`
名称	SmilChr01G002872
描述	photosystem I chlorophyll a/b-binding protein 6, chloroplastic
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	47317702 - 47319138 / `-`

ID 对照

NCBI Gene ID	`LOC130987813`
GeneID	`130987813`
locus_tag	`-`
NCBI Name	`LOC130987813`
原始查询	`LOC130987813`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	photosystem I chlorophyll a/b-binding protein 6, chloroplastic
产物	photosystem I chlorophyll a/b-binding protein 6%2C chloroplastic
Arabidopsis	`AT1G19150` (Lhca6) PSI type II chlorophyll a/b-binding protein (Lhca2*1) [Source:NCBI gene (formerly Entrezgene);Acc:838498] identity=77.7; qcov=0.919; evalue=7.56e-139; confidence=high
Rice	`Os09g0439500` (Lhca6) - identity=69.3; qcov=1.02; evalue=9.39e-128; confidence=high
GO	GO:0009416 (response to light stimulus); GO:0009768 (photosynthesis, light harvesting in photosystem I); GO:0016020 (membrane)
KEGG	smil00196 (Photosynthesis - antenna proteins - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00504 (Chloroa_b-bind)
InterPro	-
eggNOG	-
NR	GeneID:130987813

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057767482.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057767482.1`
3	Chloroplast thylakoid membrane	类囊体膜	1.00000	`XP_057767482.1`
4	Nucleus	细胞核	0.00000	`XP_057767482.1`
5	Chromosome	染色体	0.00000	`XP_057767482.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:47317797`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr1:47317861`	`G`	`GAT`	2bp_insertion	frameshift_variant	2	B73,B82
`Chr1:47317861`	`G`	`GAT`	2bp_insertion	CDS_variant	2	B73,B82
`Chr1:47317892`	`GAA`	`G`	2bp_deletion	frameshift_variant	37	A13,A16,A19,A6,B100,B102,B111,B114,B120,B128,B132,B133,B137,B138,B15,B19,B26,B28,B45,B46,B70,B81,B90,B92,C1,C10,C20,C41,C45,C51,C52,C53,C54,C63,C67,C75,C76
`Chr1:47317895`	`GT`	`G`	1bp_deletion	frameshift_variant	37	A13,A16,A19,A6,B100,B102,B111,B114,B120,B128,B132,B133,B137,B138,B15,B19,B26,B28,B45,B46,B70,B81,B90,B92,C1,C10,C20,C41,C45,C51,C52,C53,C54,C63,C67,C75,C76
`Chr1:47317954`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr1:47318126`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B21
`Chr1:47318126`	`AC`	`A`	1bp_deletion	CDS_variant	1	B21
`Chr1:47318343`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B105,B75
`Chr1:47318552`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,D7
`Chr1:47318667`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,B134,B87
`Chr1:47318709`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767482.1

308 aa

154

308

Chloroa_b-bind

PF00504 Chloroa_b-bind 63-229 aa

XP_057767492.1

259 aa

130

259

Chloroa_b-bind

PF00504 Chloroa_b-bind 63-229 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767482.1`	Pfam	`PF00504`	Chloroa_b-bind	Family	63	229	7.1e-51	173.6	Chlorophyll A-B binding protein
`XP_057767492.1`	Pfam	`PF00504`	Chloroa_b-bind	Family	63	229	4.6e-51	174.2	Chlorophyll A-B binding protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911509.1
GTGAATAAGTATAAAAAATAGAGGTAGAAAGTAAAAGGATGTGTAGTATTTAAAAATGGAAAATGCATAATAGGAGTATTATATTAGAGATGGACGAAAATGAGAAAATGTGTATATTTATTAAAGATGAGAGTATAATATTTTGTTAGGAATATTATGTCCACAGGCTTGTGTGGATAAGCCATCTTCAAACCAACATTTCATCCATGGCTCTAGCCACCGCCGCTGCTGCATTCTCCGGCTTCCCCACCACCACCAGA...

XM_057911499.1
ATGAGAAAATGTGTATATTTATTAAAGATGAGAGTATAATATTTTGTTAGGAATATTATGTCCACAGGCTTGTGTGGATAAGCCATCTTCAAACCAACATTTCATCCATGGCTCTAGCCACCGCCGCTGCTGCATTCTCCGGCTTCCCCACCACCACCAGAGAAATTCCAGCATCATCTCTCCCCGGAAAGACAGCCACATTGCGGCGGCGCGGCCTGAATGCGACAAAAGGACCGTCGAGCGTTTGCCAGCCGCTCCCG...

CDS

2 records

下载 CDS FASTA

LOC130987813
ATGGCTCTAGCCACCGCCGCTGCTGCATTCTCCGGCTTCCCCACCACCACCAGAGAAATTCCAGCATCATCTCTCCCCGGAAAGACAGCCACATTGCGGCGGCGCGGCCTGAATGCGACAAAAGGACCGTCGAGCGTTTGCCAGCCGCTCCCGCCCGACAGGCCGCTCTGGTTCCCCGGCAGTTCTCCCCCGGAATGGCTCGACGGCAGTCTTCCTGGAGATTTCGGATTCGACCCGCTCGGATTAGGATCGGATCCGGA...

Protein

2 records

下载 Protein FASTA

XP_057767482.1
MALATAAAAFSGFPTTTREIPASSLPGKTATLRRRGLNATKGPSSVCQPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLGVAGILIPEWLQGLGFIENFSWYSAGEREYFADPATLLVMQLALMGWAEGRRWADMLNPGCVDMEPNLPHKTKPKADVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQAVYTHQTPIQNLMAHIADPGHCNIFSVLSLSI...

XP_057767492.1
MALATAAAAFSGFPTTTREIPASSLPGKTATLRRRGLNATKGPSSVCQPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLGVAGILIPEWLQGLGFIENFSWYSAGEREYFADPATLLVMQLALMGWAEGRRWADMLNPGCVDMEPNLPHKTKPKADVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQAVYTHQTPIQNLMAHIADPGHCNIFSAFTTH

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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