Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000284`

染色体: Chr06 坐标: 1950068-1953369 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000284`
名称	SmilChr06G000284
描述	nuclear transcription factor Y subunit C-1-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	1950068 - 1953369 / `-`

ID 对照

NCBI Gene ID	`LOC130987817`
GeneID	`130987817`
locus_tag	`-`
NCBI Name	`LOC130987817`
原始查询	`LOC130987817`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	nuclear transcription factor Y subunit C-1-like
产物	nuclear transcription factor Y subunit C-1-like
Arabidopsis	`AT3G48590` (NF-YC1) nuclear factor Y, subunit C1 [Source:NCBI gene (formerly Entrezgene);Acc:824019] identity=84.4; qcov=0.769; evalue=1.7e-97; confidence=high
Rice	`Os02g0170500` (OsHAP5A) - identity=73.5; qcov=0.604; evalue=1.01e-64; confidence=high
GO	GO:0001228 (DNA-binding transcription activator activity, RNA polymerase II-specific); GO:0003677 (DNA binding); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0046982 (protein heterodimerization activity)
KEGG	-
Pfam	PF00125 (Histone); PF00808 (CBFD_NFYB_HMF)
InterPro	-
eggNOG	-
NR	GeneID:130987817

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057767484.1`
2	Chromosome	染色体	0.00000	`XP_057767484.1`
3	Centromere	着丝粒	0.00000	`XP_057767484.1`
4	Chromatin	染色质	0.00000	`XP_057767484.1`
5	Telomere	端粒	0.00000	`XP_057767484.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:1952443`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C26,C55,D3
`Chr6:1952511`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B70
`Chr6:1952520`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B70
`Chr6:1952523`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B70
`Chr6:1952658`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr6:1953041`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767484.1

225 aa

112

225

Histone

CBFD_NFYB_HMF

PF00125 Histone 53-126 aa PF00808 CBFD_NFYB_HMF 63-126 aa

XP_057767485.1

225 aa

112

225

Histone

CBFD_NFYB_HMF

PF00125 Histone 53-126 aa PF00808 CBFD_NFYB_HMF 63-126 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767484.1`	Pfam	`PF00125`	Histone	Domain	53	126	1.7e-17	64.3	Core histone H2A/H2B/H3/H4 domain
`XP_057767484.1`	Pfam	`PF00808`	CBFD_NFYB_HMF	Domain	63	126	1.4e-16	61.2	Histone-like transcription factor (CBF/NF-Y) and archaeal histone
`XP_057767485.1`	Pfam	`PF00125`	Histone	Domain	53	126	1.7e-17	64.3	Core histone H2A/H2B/H3/H4 domain
`XP_057767485.1`	Pfam	`PF00808`	CBFD_NFYB_HMF	Domain	63	126	1.4e-16	61.2	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911502.1
ACGACAAAGCTAAGCACACTCCTAAAATGAATCCCCTGCCACACCCAAAAACACTATCGCCACTCCAATTTGAGGCGAAATGATTGTACCATACGCATCCCACACTGTACATGTGCGTGGATGAAGGAAGCGAAGCCCACTCCCAATATAGTAGTGTTATATATATCTCATCTTCTTTCTCATAAATCCAAAAAGCTGAAAAAATAAAATAAAATCAGAAATTTCCCCAATCTCAATTTCGCATCGCCAAGAGGAAGAAA...

XM_057911501.1
TAAGCACACTCCTAAAATGAATCCCCTGCCACACCCAAAAACACTATCGCCACTCCAATTTGAGGCGAAATGATTGTACCATACGCATCCCACACTGTACATGTGCGTGGATGAAGGAAGCGAAGCCCACTCCCAATATAGTAGTGTTATATATATCTCATCTTCTTTCTCATAAATCCAAAAAGCTGAAAAAATAAAATAAAATCAGAAATTTCCCCAATCTCAATTTCGCATCGCCAAGAGGAAGAAAAATCCCTGAG...

CDS

2 records

下载 CDS FASTA

LOC130987817
ATGGAAAACAACCCGCAGCAGAGCGCGGCGCCGCCGTACCCGCCGGGCGCGGCGGCGGCGGCGGCGGCGGGGTACCCGTCGCAGCCGCCGTACCAGAACCTCCTGCAGCAGCAGCAGCATCAATTGCAGGTGTTCTGGAATTACCAGAAGCAGGAGATCGAGCAGGTGAACGATTTCAAAAACCACCAGCTCCCCCTGGCTCGGATCAAGAAGATCATGAAGGCCGACGAGGACGTCCGCATGATCTCGGCGGAGGCGCC...

Protein

2 records

下载 Protein FASTA

XP_057767484.1
MENNPQQSAAPPYPPGAAAAAAAGYPSQPPYQNLLQQQQHQLQVFWNYQKQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAALGGIVGPPAGVTGVPYYYPPMGQPMMGRPAVDPGVYVQPPPPPSQAWQSVWQTGAEDGSYGSGGGASSGQGNLDG

XP_057767485.1
MENNPQQSAAPPYPPGAAAAAAAGYPSQPPYQNLLQQQQHQLQVFWNYQKQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAALGGIVGPPAGVTGVPYYYPPMGQPMMGRPAVDPGVYVQPPPPPSQAWQSVWQTGAEDGSYGSGGGASSGQGNLDG

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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