当前解析结果
SmilChr06G000237| 统一新 Gene ID | SmilChr06G000237 |
|---|---|
| 名称 | SmilChr06G000237 |
| 描述 | uncharacterized SmilChr06G000237 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 1592334 - 1593662 / + |
| NCBI Gene ID | LOC130987827 |
|---|---|
| GeneID | 130987827 |
| locus_tag | - |
| NCBI Name | LOC130987827 |
| 原始查询 | LOC130987827 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | excitatory amino acid transporter [Source:NCBI gene (formerly Entrezgene);Acc:827761]; symbol=AT4G20150; hit=AT4G20150; species=arabidopsis; confidence=low |
| 产物 | excitatory amino acid transporter [Source:NCBI gene (formerly Entrezgene);Acc:827761]; symbol=AT4G20150; hit=AT4G20150; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G20150 (AT4G20150)excitatory amino acid transporter [Source:NCBI gene (formerly Entrezgene);Acc:827761] identity=47.2; qcov=0.349; evalue=2.29e-06; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987827 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057767509.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057767509.1 |
| 3 | Mitochondrion outer membrane | 线粒体外膜 | 0.80000 | XP_057767509.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057767509.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057767509.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:1592392 |
TG |
T |
1bp_deletion | frameshift_variant | 4 | B14,B26,C21,C40 |
Chr6:1592392 |
TG |
T |
1bp_deletion | CDS_variant | 4 | B14,B26,C21,C40 |
Chr6:1592409 |
T |
TTC |
2bp_insertion | frameshift_variant | 82 | A1,A10,A11,A14,A15,A2,A20,A23,B103,B108,B112,B113,B117,B12,B123,B126,B13,B131,B132,B135,B138,B14,B140,B19,B21,B24,B25,B26,B28,B3,B31,B32,B5,B54,B55,B56,B60,B65,B68,B7,B70,B80,B86,B89,B90,B95,B96,C14,C15,C21,C24,C27,C28,C30,C31,C32,C33,C37,C41,C42,C43,C52,C54,C55,C56,C57,C63,C65,C68,C70,C71,C75,C76,C77,C84,C9,D1,D11,D3,D4,D5,D8 |
Chr6:1592411 |
GGA |
G |
2bp_deletion | frameshift_variant | 147 | A1,A10,A11,A14,A15,A16,A19,A2,A20,A23,A3,A5,A6,A7,A8,B100,B101,B102,B103,B108,B111,B112,B113,B117,B118,B12,B122,B123,B126,B128,B13,B130,B131,B132,B135,B136,B137,B138,B139,B14,B140,B18,B19,B20,B21,B24,B25,B26,B27,B28,B3,B30,B31,B32,B40,B42,B43,B45,B47,B5,B50,B52,B54,B55,B56,B57,B59,B60,B64,B65,B68,B7,B70,B74,B8,B80,B81,B86,B87,B88,B89,B90,B91,B92,B94,B95,B96,C10,C13,C14,C15,C16,C17,C19,C2,C21,C24,C25,C27,C28,C30,C31,C32,C33,C35,C36,C37,C4,C41,C42,C43,C44,C45,C47,C48,C5,C50,C52,C54,C55,C56,C57,C6,C61,C63,C65,C68,C70,C71,C72,C75,C76,C77,C78,C80,C82,C84,C85,C87,C9,D1,D11,D2,D3,D4,D5,D8 |
Chr6:1592446 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:1592658 |
AAG |
A |
2bp_deletion | frameshift_variant | 5 | B137,C18,C37,C46,D7 |
Chr6:1592658 |
AAG |
A |
2bp_deletion | CDS_variant | 5 | B137,C18,C37,C46,D7 |
Chr6:1593304 |
GGT |
G |
2bp_deletion | frameshift_variant | 1 | A22 |
Chr6:1593304 |
GGT |
G |
2bp_deletion | CDS_variant | 1 | A22 |
Chr6:1593385 |
C |
CG |
1bp_insertion | frameshift_variant | 11 | A14,A6,B102,B140,B28,B31,B39,B74,B9,C26,D9 |
Chr6:1593469 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,B109,D4 |
Chr6:1593490 |
C |
CA |
1bp_insertion | frameshift_variant | 25 | A1,A2,A7,A9,B120,B121,B123,B2,B28,B32,B39,B41,B44,B58,B63,B68,B97,C33,C45,C50,C57,C64,C67,C69,C80 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。