Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000292`

染色体: Chr06 坐标: 2054907-2056827 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000292`
名称	SmilChr06G000292
描述	heavy metal-associated isoprenylated plant protein 7-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	2054907 - 2056827 / `+`

ID 对照

NCBI Gene ID	`LOC130987837`
GeneID	`130987837`
locus_tag	`-`
NCBI Name	`LOC130987837`
原始查询	`LOC130987837`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	heavy metal-associated isoprenylated plant protein 7-like
产物	heavy metal-associated isoprenylated plant protein 7-like
Arabidopsis	`AT5G50740` (AT5G50740) Heavy metal transport/detoxification superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835146] identity=51.9; qcov=0.951; evalue=7.22e-79; confidence=high
Rice	`Os02g0510600` - identity=47.5; qcov=0.93; evalue=5.97e-66; confidence=high
GO	GO:0046872 (metal ion binding)
KEGG	-
Pfam	PF00403 (HMA)
InterPro	-
eggNOG	-
NR	GeneID:130987837

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057767517.1`
2	Cell membrane	细胞膜	0.60000	`XP_057767517.1`
3	Nucleus	细胞核	0.00000	`XP_057767517.1`
4	Chromosome	染色体	0.00000	`XP_057767517.1`
5	Centromere	着丝粒	0.00000	`XP_057767517.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:2055227`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C25
`Chr6:2055230`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B29,C44
`Chr6:2055238`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B118,B19,B37,B69
`Chr6:2055267`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:2055456`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B31,C24,C46
`Chr6:2055579`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B110,B16,B50,B62,C50
`Chr6:2055591`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B92
`Chr6:2055624`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr6:2056121`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B56,B96,D2
`Chr6:2056140`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B103,B26,D11
`Chr6:2056249`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B86,C57
`Chr6:2056259`	`A`	`AG`	1bp_insertion	frameshift_variant	5	B124,B139,B32,B54,C45

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767517.1

329 aa

164

329

HMA

PF00403 HMA 50-100 aa PF00403 HMA 150-203 aa

XP_057767518.1

328 aa

164

328

HMA

PF00403 HMA 50-100 aa PF00403 HMA 149-202 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767517.1`	Pfam	`PF00403`	HMA	Domain	50	100	6.8e-26	91.2	Heavy-metal-associated domain
`XP_057767517.1`	Pfam	`PF00403`	HMA	Domain	150	203	6.8e-26	91.2	Heavy-metal-associated domain
`XP_057767518.1`	Pfam	`PF00403`	HMA	Domain	50	100	6.8e-26	91.2	Heavy-metal-associated domain
`XP_057767518.1`	Pfam	`PF00403`	HMA	Domain	149	202	6.8e-26	91.2	Heavy-metal-associated domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911534.1
CCCCACCCCCACCTCACTCCCCCTACCCGGACCTCTTTTCTATTAACTGAGTGTTCACTTGGGTGATTACCCCGAGAAAAACACAAGCACCAAAGGTGCAAAACTCTGCATTTCCGCTATCCACAAAGAGAAAGAGAGAGAGAAGAAACGAAGAAGGAAAGCCAATGGGAGAGGAAGAGAAGAAACCGGAGGAGGCCAAGCCGGCGCCGGCACCGGAGGAGAAGAAGGACGAACCCCCGAAGGCTCCAGATGACAAGAAA...

XM_057911535.1
ACTCCCCCTACCCGGACCTCTTTTCTATTAACTGAGTGTTCACTTGGGTGATTACCCCGAGAAAAACACAAGCACCAAAGGTGCAAAACTCTGCATTTCCGCTATCCACAAAGAGAAAGAGAGAGAGAAGAAACGAAGAAGGAAAGCCAATGGGAGAGGAAGAGAAGAAACCGGAGGAGGCCAAGCCGGCGCCGGCACCGGAGGAGAAGAAGGACGAACCCCCGAAGGCTCCAGATGACAAGAAACCCGACGCCGCGGAG...

CDS

2 records

下载 CDS FASTA

LOC130987837
ATGGGAGAGGAAGAGAAGAAACCGGAGGAGGCCAAGCCGGCGCCGGCACCGGAGGAGAAGAAGGACGAACCCCCGAAGGCTCCAGATGACAAGAAACCCGACGCCGCGGAGCAGCCGCCCCCGCCTCAGGAGATCATCCTCAAAGTCTACATGCATTGCGAGGGCTGCGCTCGGAAAGTCCGCCGCTGTCTCAAAGGATTTGATGGTGTGGAGGATGTGACGACGGATTGCAAGACGAGTAAAGTGGTGGTGAAAGGAGA...

Protein

2 records

下载 Protein FASTA

XP_057767517.1
MGEEEKKPEEAKPAPAPEEKKDEPPKAPDDKKPDAAEQPPPPQEIILKVYMHCEGCARKVRRCLKGFDGVEDVTTDCKTSKVVVKGEKADPLKVLERVQRKSHRQVELISPIPPPPAPEEAKKAEEKEPPKLEEKKEEPPVITVVLGVYMHCEACAQELKKRIQRMKGVESVEPELKSSQVTVRGALDAEKLVDYVHKRTGKHATVVKVEAPPKKEEPEKKKEEKEEKKAEEAAAAKKDEAKKDEDKKEEGEAPAKAAAA...

XP_057767518.1
MGEEEKKPEEAKPAPAPEEKKDEPPKAPDDKKPDAAEQPPPPQEIILKVYMHCEGCARKVRRCLKGFDGVEDVTTDCKTSKVVVKGEKADPLKVLERVQRKSHRQVELISPIPPPPAPEEAKKAEEKEPPKLEEKKEPPVITVVLGVYMHCEACAQELKKRIQRMKGVESVEPELKSSQVTVRGALDAEKLVDYVHKRTGKHATVVKVEAPPKKEEPEKKKEEKEEKKAEEAAAAKKDEAKKDEDKKEEGEAPAKAAAAA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器