Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000315`

染色体: Chr06 坐标: 2277245-2284218 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000315`
名称	SmilChr06G000315
描述	RNA pseudouridine synthase 7
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	2277245 - 2284218 / `+`

ID 对照

NCBI Gene ID	`LOC130987848`
GeneID	`130987848`
locus_tag	`-`
NCBI Name	`LOC130987848`
原始查询	`LOC130987848`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RNA pseudouridine synthase 7
产物	RNA pseudouridine synthase 7
Arabidopsis	`AT5G51140` (AT5G51140) Pseudouridine synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835188] identity=67; qcov=0.894; evalue=9.96e-180; confidence=high
Rice	`Os02g0512300` - identity=80.8; qcov=0.319; evalue=1.32e-69; confidence=low
GO	GO:0001522 (pseudouridine synthesis); GO:0003723 (RNA binding); GO:0009982 (pseudouridine synthase activity)
KEGG	-
Pfam	PF00849 (PseudoU_synth_2)
InterPro	-
eggNOG	-
NR	GeneID:130987848

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057767528.1`
2	Cytoplasm	细胞质	1.00000	`XP_057767528.1`
3	Chromosome	染色体	0.00000	`XP_057767528.1`
4	Centromere	着丝粒	0.00000	`XP_057767528.1`
5	Chromatin	染色质	0.00000	`XP_057767528.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:2277434`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:2279542`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:2280360`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr6:2280542`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr6:2282146`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr6:2282183`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A9,B101,B93
`Chr6:2283486`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B100,B101,B85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767528.1

408 aa

204

408

PseudoU_synth_2

PF00849 PseudoU_synth_2 129-288 aa

XP_057767529.1

408 aa

204

408

PseudoU_synth_2

PF00849 PseudoU_synth_2 129-288 aa

XP_057767530.1

407 aa

204

407

PseudoU_synth_2

PF00849 PseudoU_synth_2 129-288 aa

XP_057767531.1

404 aa

202

404

PseudoU_synth_2

PF00849 PseudoU_synth_2 129-284 aa

XP_057767532.1

403 aa

202

403

PseudoU_synth_2

PF00849 PseudoU_synth_2 129-284 aa

XP_057767534.1

407 aa

204

407

PseudoU_synth_2

PF00849 PseudoU_synth_2 129-288 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767528.1`	Pfam	`PF00849`	PseudoU_synth_2	Family	129	288	4.3e-28	99.2	RNA pseudouridylate synthase
`XP_057767529.1`	Pfam	`PF00849`	PseudoU_synth_2	Family	129	288	4.3e-28	99.2	RNA pseudouridylate synthase
`XP_057767530.1`	Pfam	`PF00849`	PseudoU_synth_2	Family	129	288	4.3e-28	99.2	RNA pseudouridylate synthase
`XP_057767531.1`	Pfam	`PF00849`	PseudoU_synth_2	Family	129	284	3.5e-28	99.5	RNA pseudouridylate synthase
`XP_057767532.1`	Pfam	`PF00849`	PseudoU_synth_2	Family	129	284	3.5e-28	99.5	RNA pseudouridylate synthase
`XP_057767534.1`	Pfam	`PF00849`	PseudoU_synth_2	Family	129	288	4.3e-28	99.2	RNA pseudouridylate synthase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057911551.1
AGATTAGAAAATCAATGCAGGTATATCTAAAGAGACATTTAATCGGTGCAAATTCATGTATGTAAACAGTGAATTCAACAATTTCCCAAAAGAAAGGGGAAAAAAAAAGTAATGAAGGGGTTTAGTGGGGAAAGCAAGCAGCTAAAACAACAGTAAAAAGTATGAAGGGAGGGATGAAGAGAAAGAGAAGCCAACCAGACGAAACCATGGACATTGTGTGGCAAACTCCCGCCAATCCTCCTCATCGCCAAGATTACATT...

XM_057911548.1
AGATTAGAAAATCAATGCAGGTATATCTAAAGAGACATTTAATCGGTGCAAATTCATGTATGTAAACAGTGAATTCAACAATTTCCCAAAAGAAAGGGGAAAAAAAAAGTAATGAAGGGGTTTAGTGGGGAAAGCAAGCAGCTAAAACAACAGTAAAAAGTATGAAGGGAGGGATGAAGAGAAAGAGAAGCCAACCAGACGAAACCATGGACATTGTGTGGCAAACTCCCGCCAATCCTCCTCATCGCCAAGATTACATT...

CDS

6 records

下载 CDS FASTA

LOC130987848
ATGAAGGGAGGGATGAAGAGAAAGAGAAGCCAACCAGACGAAACCATGGACATTGTGTGGCAAACTCCCGCCAATCCTCCTCATCGCCAAGATTACATTTTTCGGGACGGAGTAAGATACGTCAGGCCATACTATTTCGAGTTCATTTCGCATGCAAAGAATAGATGGGCGGGGAAGACCATTGTCGATTTGTTTACGGATGAATTTAAAGGCCGACCTCGTGATTATTATGTGTCTGCAGTGAAAACTGGACGTATCCA...

Protein

6 records

下载 Protein FASTA

XP_057767528.1
MKGGMKRKRSQPDETMDIVWQTPANPPHRQDYIFRDGVRYVRPYYFEFISHAKNRWAGKTIVDLFTDEFKGRPRDYYVSAVKTGRIQVDGQKVPISYVVQPSQKISHFLHRHEPPVMAMDIQILHTEPDVVTVYKPATTPVHPCGQYRKNTVVGILEAEHDLAPLFPIHRLDRLVSGLLIIARSASKADIFRQQIESGEVKKQYIARVTGVFPEDEQVADVNVNYNAREGRSTVERLVQVENGPTEKNSVKGKAACTKFT...

XP_057767529.1
MKGGMKRKRSQPDETMDIVWQTPANPPHRQDYIFRDGVRYVRPYYFEFISHAKNRWAGKTIVDLFTDEFKGRPRDYYVSAVKTGRIQVDGQKVPISYVVQPSQKISHFLHRHEPPVMAMDIQILHTEPDVVTVYKPATTPVHPCGQYRKNTVVGILEAEHDLAPLFPIHRLDRLVSGLLIIARSASKADIFRQQIESGEVKKQYIARVTGVFPEDEQVADVNVNYNAREGRSTVERLVQVENGPTEKNSVKGKAACTKFT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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