当前解析结果
SmilChr06G000331| 统一新 Gene ID | SmilChr06G000331 |
|---|---|
| 名称 | SmilChr06G000331 |
| 描述 | probable serine/threonine-protein kinase At1g54610 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 2471310 - 2476103 / - |
| NCBI Gene ID | LOC130987876 |
|---|---|
| GeneID | 130987876 |
| locus_tag | - |
| NCBI Name | LOC130987876 |
| 原始查询 | LOC130987876 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable serine/threonine-protein kinase At1g54610 |
| 产物 | probable serine/threonine-protein kinase At1g54610 |
| Arabidopsis | AT5G50860 (AT5G50860)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835158] identity=65.8; qcov=0.83; evalue=0; confidence=high |
| Rice | Os01g0367700 (Orysa)- identity=67.7; qcov=0.856; evalue=0; confidence=high |
| GO | GO:0000307 (cyclin-dependent protein kinase holoenzyme complex); GO:0004693 (cyclin-dependent protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006468 (protein phosphorylation); GO:0008353 (RNA polymerase II CTD heptapeptide repeat kinase activity); GO:0032968 (positive regulation of transcription elongation by RNA polymerase II) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF03109 (ABC1); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987876 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057767558.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057767558.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057767558.1 |
| 4 | Cytoskeleton | 细胞骨架 | 0.20000 | XP_057767558.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057767558.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:2471567 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr6:2471606 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr6:2471639 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B58 |
Chr6:2471663 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A4,B64,C17,C7 |
Chr6:2471668 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A13,B81 |
Chr6:2471670 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr6:2471745 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,A16,B17,B45,B73 |
Chr6:2471765 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B58,C83 |
Chr6:2471849 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,A23 |
Chr6:2472089 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr6:2472092 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr6:2474807 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767558.1PF00069
Pkinase 102-386 aa
PF07714
PK_Tyr_Ser-Thr 104-314 aa
PF03109
ABC1 171-265 aa
XP_057767559.1PF00069
Pkinase 102-386 aa
PF07714
PK_Tyr_Ser-Thr 104-314 aa
PF03109
ABC1 171-265 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767558.1 |
Pfam | PF00069 |
Pkinase | Domain | 102 | 386 | 9.5e-69 | 232.4 | Protein kinase domain |
XP_057767558.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 104 | 314 | 5e-30 | 105.4 | Protein tyrosine and serine/threonine kinase |
XP_057767558.1 |
Pfam | PF03109 |
ABC1 | Domain | 171 | 265 | 9.2e-07 | 29.0 | ABC1 atypical kinase-like domain |
XP_057767559.1 |
Pfam | PF00069 |
Pkinase | Domain | 102 | 386 | 9.5e-69 | 232.4 | Protein kinase domain |
XP_057767559.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 104 | 314 | 5e-30 | 105.4 | Protein tyrosine and serine/threonine kinase |
XP_057767559.1 |
Pfam | PF03109 |
ABC1 | Domain | 171 | 265 | 9.2e-07 | 29.0 | ABC1 atypical kinase-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。