Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000366`

染色体: Chr06 坐标: 2797088-2799857 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000366`
名称	SmilChr06G000366
描述	uncharacterized SmilChr06G000366
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	2797088 - 2799857 / `-`

ID 对照

NCBI Gene ID	`LOC130987913`
GeneID	`130987913`
locus_tag	`-`
NCBI Name	`LOC130987913`
原始查询	`LOC130987913`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ssu72-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:843718]; symbol=AT1G73820; hit=AT1G73820; species=arabidopsis; confidence=high
产物	Ssu72-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:843718]; symbol=AT1G73820; hit=AT1G73820; species=arabidopsis; confidence=high
Arabidopsis	`AT1G73820` (AT1G73820) Ssu72-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:843718] identity=80.3; qcov=1; evalue=2.84e-120; confidence=high
Rice	`Os12g0168200` - identity=69.4; qcov=1; evalue=2.11e-106; confidence=high
GO	GO:0005634 (nucleus); GO:0005847 (mRNA cleavage and polyadenylation specificity factor complex); GO:0006369 (termination of RNA polymerase II transcription); GO:0006378 (GO:0006378); GO:0008420 (RNA polymerase II CTD heptapeptide repeat phosphatase activity)
KEGG	smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage))
Pfam	PF04722 (Ssu72)
InterPro	-
eggNOG	-
NR	GeneID:130987913

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057767598.1`
2	Cytoplasm	细胞质	1.00000	`XP_057767599.1`
3	Nucleoplasm	核质	0.80000	`XP_057767598.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:2797365`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B75,D7
`Chr6:2797441`	`A`	`AT`	1bp_insertion	frameshift_variant	1	B108
`Chr6:2797441`	`A`	`AT`	1bp_insertion	CDS_variant	1	B108
`Chr6:2797485`	`T`	`TG`	1bp_insertion	frameshift_variant	2	A10,C39
`Chr6:2797485`	`T`	`TG`	1bp_insertion	CDS_variant	2	A10,C39
`Chr6:2797493`	`AT`	`A`	1bp_deletion	frameshift_variant	28	A10,A20,A3,B10,B104,B107,B108,B111,B127,B43,B46,B72,B77,B91,B96,B97,B99,C18,C27,C31,C38,C39,C56,C59,C65,C71,C85,D8
`Chr6:2797500`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr6:2797502`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr6:2797524`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B101,B104,C29
`Chr6:2797575`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B101,B104
`Chr6:2798233`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A5,A7
`Chr6:2798321`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B114,C46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767598.1

200 aa

100

200

Ssu72

PF04722 Ssu72 4-162 aa

XP_057767599.1

193 aa

193

Ssu72

PF04722 Ssu72 4-193 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767598.1`	Pfam	`PF04722`	Ssu72	Family	4	162	5.8e-72	241.9	Ssu72-like protein
`XP_057767599.1`	Pfam	`PF04722`	Ssu72	Family	4	193	7.6e-81	270.9	Ssu72-like protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911616.1
TCAATTTTTAAGTAGATTTAATAAGTGAGGGCTGAAGTCCTTATTTAGGGTGGGAAACTTCATCTTCTACAATCACTGCTTTTACAGTCACTGCGAAATGAGAGATAGAAGAAATCAATGAATTGAGTGATCGATCGGGAAATTGATAGGGCGGAGATGAAGCTGCGGCACGCAATGGTGTGCTCTTCGAATCAGAACAGGAGCATGGAGGCGCACGCGCTGCTCAAGAGAGAAGGCTTCGACGTGGCTTCCTACGGAAC...

XM_057911615.1
TTAAGTAGATTTAATAAGTGAGGGCTGAAGTCCTTATTTAGGGTGGGAAACTTCATCTTCTACAATCACTGCTTTTACAGTCACTGCGAAATGAGAGATAGAAGAAATCAATGAATTGAGTGATCGATCGGGAAATTGATAGGGCGGAGATGAAGCTGCGGCACGCAATGGTGTGCTCTTCGAATCAGAACAGGAGCATGGAGGCGCACGCGCTGCTCAAGAGAGAAGGCTTCGACGTGGCTTCCTACGGAACTGGGCAG...

CDS

2 records

下载 CDS FASTA

LOC130987913
ATGAAGCTGCGGCACGCAATGGTGTGCTCTTCGAATCAGAACAGGAGCATGGAGGCGCACGCGCTGCTCAAGAGAGAAGGCTTCGACGTGGCTTCCTACGGAACTGGGCAGCACGTTAAGCTGCCTGGACCCTCCCTTAGAGAACCCAACGTCTACGATTTCGGCACCCCCTACAAGCAAATGTTCGACGACCTCCGCCGCAAAGACCCCGAGCTATATCGGCGAAACGGAATACTACCAATGCTCAAGAGGAACTTATC...

Protein

2 records

下载 Protein FASTA

XP_057767598.1
MKLRHAMVCSSNQNRSMEAHALLKREGFDVASYGTGQHVKLPGPSLREPNVYDFGTPYKQMFDDLRRKDPELYRRNGILPMLKRNLSVKTAPQRWQENAADGTFDVVLTFEEKVFDMVLEDLHNRKQVLLKPVLVINLEVKDNHEEAAIGGRLALQLCQEVHLLCYPEIEHSSFSCLLLYAIICRSRLLKTGRNVLTILL

XP_057767599.1
MKLRHAMVCSSNQNRSMEAHALLKREGFDVASYGTGQHVKLPGPSLREPNVYDFGTPYKQMFDDLRRKDPELYRRNGILPMLKRNLSVKTAPQRWQENAADGTFDVVLTFEEKVFDMVLEDLHNRKQVLLKPVLVINLEVKDNHEEAAIGGRLALQLCQEIEAAENWEECVDDLIINFERQNHRKLVYSISYY

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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