Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002887`

染色体: Chr01 坐标: 47482471-47489102 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002887`
名称	SmilChr01G002887
描述	auxin response factor 19-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	47482471 - 47489102 / `-`

ID 对照

NCBI Gene ID	`LOC130987920`
GeneID	`130987920`
locus_tag	`-`
NCBI Name	`LOC130987920`
原始查询	`LOC130987920`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	auxin response factor 19-like
产物	auxin response factor 19-like
Arabidopsis	`AT1G19220` (ARF19) auxin response factor 19 [Source:NCBI gene (formerly Entrezgene);Acc:838505] identity=79.7; qcov=0.394; evalue=0; confidence=low
Rice	`Os06g0196700` - identity=77.3; qcov=0.392; evalue=0; confidence=low
GO	GO:0003677 (DNA binding); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0009725 (response to hormone)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF02309 (AUX_IAA); PF02362 (B3); PF06507 (ARF_AD)
InterPro	-
eggNOG	-
NR	GeneID:130987920

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057767613.1`
2	Chromosome	染色体	0.00000	`XP_057767613.1`
3	Centromere	着丝粒	0.00000	`XP_057767613.1`
4	Chromatin	染色质	0.00000	`XP_057767613.1`
5	Telomere	端粒	0.00000	`XP_057767613.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:47482823`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr1:47482859`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B6
`Chr1:47483181`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr1:47483210`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:47483715`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B14,B57,C54
`Chr1:47484228`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr1:47484320`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A3,B2,B33,B66
`Chr1:47484606`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr1:47484777`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr1:47485003`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr1:47485406`	`TAA`	`T`	2bp_deletion	frameshift_variant	1	B35
`Chr1:47485406`	`TAA`	`T`	2bp_deletion	CDS_variant	1	B35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767613.1

1086 aa

543

1086

ARF_AD

AUX_IAA

PF02362 B3 126-227 aa PF06507 ARF_AD 275-357 aa PF02309 AUX_IAA 956-1045 aa

XP_057767621.1

991 aa

496

991

ARF_AD

AUX_IAA

PF02362 B3 31-132 aa PF06507 ARF_AD 180-262 aa PF02309 AUX_IAA 861-950 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767613.1`	Pfam	`PF02362`	B3	Domain	126	227	1.3e-23	83.5	B3 DNA binding domain
`XP_057767613.1`	Pfam	`PF06507`	ARF_AD	Domain	275	357	6.3e-36	122.8	Auxin response factor ancillary domain
`XP_057767613.1`	Pfam	`PF02309`	AUX_IAA	Family	956	1045	5.5e-09	36.9	AUX/IAA family
`XP_057767621.1`	Pfam	`PF02362`	B3	Domain	31	132	9.8e-24	83.9	B3 DNA binding domain
`XP_057767621.1`	Pfam	`PF06507`	ARF_AD	Domain	180	262	5.5e-36	123.0	Auxin response factor ancillary domain
`XP_057767621.1`	Pfam	`PF02309`	AUX_IAA	Family	861	950	4.9e-09	37.0	AUX/IAA family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911630.1
TTAACGAGTAATAAACCCAAAATTGAAGATTAATGTTTACGTAATACAGAAAAATGTCATGAAAGAGCGAAACACGCAATGTAGCTTCCTACTTTCTTTAATCCTCTGCGCTTGGTTTAATGTCGGCCTGCCCCTCTCTCTGTTTCTCTCTCTACAAACACCGACCCTACACTCACACGCACACGAATACATACGTATACCCAATATACATTACACAGATTTACAGCAGCAATTTTATACTAATATTATTACAACTATAC...

XM_057911638.1
TGTCACCTTACATGTATGGAAACTTCTTATGGCATTCACGTAGCGTTTATCAAATGAAAGTCCATCGTGATTAAATTTAGGCTGATGCTGAAACTGACGAGGTCTACGCGCAAATGACTCTTCTACCGGTCACTAAGTATGACCAGGAAGCGTTGCTCGTGTCTGATATTGGCCTTAAGCATAACAGGCAACCTACTGAATTTTTCTGTAAAACTCTCACGGCAAGTGACACGAGCACTCATGGAGGCTTTTCAGTTCCT...

CDS

2 records

下载 CDS FASTA

LOC130987920
ATGAAGGTTCCATCTAATGGATTTTTGGCAAATTCAGCTGAAGGCGAAAAAAAGGTTATCAACTCTGAGTTATGGCATGCTTGCGCTGGGCCTTTGGTTTCTTTGCCACCCGTGGGGAGCCTTGTCGTCTACTTTCCTCAAGGTCACAGTGAACAAGTGGCAGCATCGATGCAGAAAGAGGCTGACGGTATCCCAAGCTATCCCAATCTTCCTTCGAAGTTGATCTGCATGCTCCACAATGTCACCTTACATGCTGATGC...

LOC130987920
ATGACTCTTCTACCGGTCACTAAGTATGACCAGGAAGCGTTGCTCGTGTCTGATATTGGCCTTAAGCATAACAGGCAACCTACTGAATTTTTCTGTAAAACTCTCACGGCAAGTGACACGAGCACTCATGGAGGCTTTTCAGTTCCTCGTCGAGCAGCTGAGAAGATCTTCCCATCTCTGGATTTCTCGATGCAACCTCCTGCTCAGGAGCTAACGGCTAAAGACTTGCATGACCAAACATGGACATTCAGACATATTTA...

Protein

2 records

下载 Protein FASTA

XP_057767613.1
MKVPSNGFLANSAEGEKKVINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADGIPSYPNLPSKLICMLHNVTLHADAETDEVYAQMTLLPVTKYDQEALLVSDIGLKHNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPSLDFSMQPPAQELTAKDLHDQTWTFRHIYRGQPKRHLLTTGWSVFVSSKRLIAGDAVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNS...

XP_057767621.1
MTLLPVTKYDQEALLVSDIGLKHNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPSLDFSMQPPAQELTAKDLHDQTWTFRHIYRGQPKRHLLTTGWSVFVSSKRLIAGDAVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTVTGISDLDPIRWKNSQWRNLQVGWDESTAGERPSRVSIWDIE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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