Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000373`

染色体: Chr06 坐标: 2874802-2878792 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000373`
名称	SmilChr06G000373
描述	uncharacterized SmilChr06G000373
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	2874802 - 2878792 / `-`

ID 对照

NCBI Gene ID	`LOC130987921`
GeneID	`130987921`
locus_tag	`-`
NCBI Name	`LOC130987921`
原始查询	`LOC130987921`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843683]; symbol=AT1G73480; hit=AT1G73480; species=arabidopsis; confidence=high
产物	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843683]; symbol=AT1G73480; hit=AT1G73480; species=arabidopsis; confidence=high
Arabidopsis	`AT1G73480` (AT1G73480) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843683] identity=62.2; qcov=1.02; evalue=0; confidence=high
Rice	`Os09g0394700` - identity=62; qcov=0.778; evalue=1.27e-137; confidence=high
GO	GO:0016020 (membrane); GO:0016298 (lipase activity)
KEGG	smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:130987921

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057767611.1`
2	Endoplasmic reticulum membrane	内质网膜	0.60000	`XP_057767611.1`
3	Nucleus	细胞核	0.00000	`XP_057767611.1`
4	Chromosome	染色体	0.00000	`XP_057767611.1`
5	Centromere	着丝粒	0.00000	`XP_057767611.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:2874851`	`TTC`	`T`	2bp_deletion	frameshift_variant	1	B68
`Chr6:2874851`	`TTC`	`T`	2bp_deletion	CDS_variant	1	B68
`Chr6:2874906`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	A23
`Chr6:2874906`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr6:2874913`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B31,B8
`Chr6:2874920`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A21,C64,C66
`Chr6:2874921`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B52,B86,C29,C42
`Chr6:2874930`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B21,C1,C39,C54
`Chr6:2874955`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr6:2874962`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B49,B79,C78,C86
`Chr6:2875018`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B10,B22
`Chr6:2875048`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B117,B65,C16,C33,C47

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767611.1

396 aa

198

396

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

PF12146 Hydrolase_4 144-380 aa PF00561 Abhydrolase_1 146-378 aa PF12697 Abhydrolase_6 147-356 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767611.1`	Pfam	`PF12146`	Hydrolase_4	Domain	144	380	1.1e-74	251.4	Serine aminopeptidase, S33
`XP_057767611.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	146	378	7.2e-21	75.7	alpha/beta hydrolase fold
`XP_057767611.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	147	356	3.6e-13	51.4	Alpha/beta hydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057911628.1
TTCTCGATGCATATCACCCTTTTTGGAGGAAAAGGAGGTGTATTTTTAGGTTATTCAAGAACTACCGAATTTTTTCTCCAACCATTTCGGATTCTGCAACAGTGTGTGAAAACAAAGAATTTGAAAAGGGATAAAGAATTTGAAAACCCCTTTTTGATTAAATCATTCAAAAATTGATTGTAACTCCTCAAAATTTTCTAAACTGTAGAATTCAAATCTTGCATATTTTTTCCGCATCAAAGTTGAATTTTTAGCTACAT...

CDS

1 records

下载 CDS FASTA

LOC130987921
ATGGCGGAAGTAGACAGCGGCAGAGCCGCCGTAATGTTGACGTCGGGGGCGAGCGGGAGAATCAACACGTTGTTTTCTCTGAGCGTATGGCAAAGTTTGTGGCTCCTGATCTATGCATTATTCTTGATCTTCGTGCTGCCATTTCGGGGGTGGCGGAAGTGCATGGCGTCGGAGTCGGCGGACAAGGGTGGCGGTGCGAAAGAGGAGAAGCTGTCGGCGCCGCCAGGAAAGGTGGTGAGGATGCCGATGGAAATGTTGCC...

Protein

1 records

下载 Protein FASTA

XP_057767611.1
MAEVDSGRAAVMLTSGASGRINTLFSLSVWQSLWLLIYALFLIFVLPFRGWRKCMASESADKGGGAKEEKLSAPPGKVVRMPMEMLPRKSVVDKEVAARRVIAIKRVMEDDGGEKSLREFSVFVSCRGDTIFTQSWTPIKVQFRGVVVILHGLNEHSGRYDDFAKKLNANGLKVYGMDWIGHGGSDGLHAYVPSLDYAVNDMKMFLNKVLAENPKLPCFCFGHSTGGAIVLKAVLDPKVEQRVAGVVLTSPAVGVXPSHP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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