Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000378`

染色体: Chr06 坐标: 2939512-2942568 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000378`
名称	SmilChr06G000378
描述	uncharacterized SmilChr06G000378
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	2939512 - 2942568 / `-`

ID 对照

NCBI Gene ID	`LOC130987926`
GeneID	`130987926`
locus_tag	`-`
NCBI Name	`LOC130987926`
原始查询	`LOC130987926`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	OSJNBb0033N16.14; symbol=OSJNBb0033N16.14; hit=Os03g0712100; species=rice; confidence=high
产物	OSJNBb0033N16.14; symbol=OSJNBb0033N16.14; hit=Os03g0712100; species=rice; confidence=high
Arabidopsis	`AT4G37110` (AT4G37110) Zinc-finger domain of monoamine-oxidase A repressor R1 [Source:NCBI gene (formerly Entrezgene);Acc:829865] identity=29.4; qcov=0.86; evalue=2.73e-22; confidence=low
Rice	`Os03g0712100` (OSJNBb0033N16.14) - identity=50.7; qcov=0.884; evalue=7.57e-84; confidence=high
GO	GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription)
KEGG	-
Pfam	PF10497 (zf-4CXXC_R1)
InterPro	-
eggNOG	-
NR	GeneID:130987926

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057767617.1`
2	Chromosome	染色体	0.00000	`XP_057767617.1`
3	Centromere	着丝粒	0.00000	`XP_057767617.1`
4	Chromatin	染色质	0.00000	`XP_057767617.1`
5	Telomere	端粒	0.00000	`XP_057767617.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:2939727`	`CT`	`C`	1bp_deletion	frameshift_variant	2	B58,C49
`Chr6:2939727`	`CT`	`C`	1bp_deletion	CDS_variant	2	B58,C49
`Chr6:2941551`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B98
`Chr6:2941590`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:2941681`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr6:2941796`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A16,C27,C64,D4
`Chr6:2941811`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr6:2941924`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr6:2942052`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr6:2942102`	`GAA`	`G`	2bp_deletion	frameshift_variant	31	A5,A7,B118,B124,B135,B19,B20,B24,B31,B34,B45,B64,B65,B66,B71,B72,B73,B76,B78,B8,C10,C30,C35,C48,C5,C53,C62,C73,C75,C86,D1
`Chr6:2942106`	`T`	`TTC`	2bp_insertion	frameshift_variant	31	A5,A7,B118,B124,B135,B19,B20,B24,B31,B34,B45,B64,B65,B66,B71,B72,B73,B76,B78,B8,C10,C30,C35,C48,C5,C53,C62,C73,C75,C86,D1
`Chr6:2942167`	`TC`	`T`	1bp_deletion	frameshift_variant	25	A10,A8,B105,B11,B134,B24,B30,B34,B41,B59,B69,B9,B91,C20,C27,C3,C31,C36,C42,C50,C56,C65,C71,C74,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767617.1

328 aa

164

328

zf-4CXXC_R1

PF10497 zf-4CXXC_R1 198-320 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767617.1`	Pfam	`PF10497`	zf-4CXXC_R1	Domain	198	320	5.2e-28	97.8	Zinc-finger domain of monoamine-oxidase A repressor R1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057911634.1
ATATTTGAAGGTGCTTTTGCACCTTTTACTACCGTCACAGACCTGTCAGATTAGCAAGAAAAATAGCCGTTTCAAGTTTAAAATACAAAGCATTGTCGTTCCCATCGGCTCTGTAACAAAGAGAGCTGAAAAAAGAAGAAAAAGAATGGGAAGATTCAAAACAAAATCCGATTACGAAGAACTCAGAAAAGCTCGCATCTTGGAAAATCAGGCGCGCTTGGCTACTTTGGGGCTTCAAAAAACCTTGCCGGAGCTGCGGT...

CDS

1 records

下载 CDS FASTA

LOC130987926
ATGGGAAGATTCAAAACAAAATCCGATTACGAAGAACTCAGAAAAGCTCGCATCTTGGAAAATCAGGCGCGCTTGGCTACTTTGGGGCTTCAAAAAACCTTGCCGGAGCTGCGGTCTCTCAATTCATCGCCGAAATCTGAGAAACCCCACAGTAGAAATTACTGCAAAGTCGATCGCAGCGCCACCCCTTTACGGCGTTCATCTCGATTGACAGGAATTTCGCCGCCATCGGAAGGCGATGCGAAATCCGATTACGAAGA...

Protein

1 records

下载 Protein FASTA

XP_057767617.1
MGRFKTKSDYEELRKARILENQARLATLGLQKTLPELRSLNSSPKSEKPHSRNYCKVDRSATPLRRSSRLTGISPPSEGDAKSDYEELRKARILENQARLATLGLQETLSELRSLNSLPKSEKIHKRKYCKVDRSATPLRRSARLTGKSPPSESGNLSYSGGSNGGEIGGAKRRLRLSKISEEDLRRRCECKARGSLYDPVYGICCHFCRQKKLCGEEDCKRCGDRDMDQPCIGKTDCSVCHSSNGILCRACLKVRYGEE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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