Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002888`

染色体: Chr01 坐标: 47538029-47543311 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002888`
名称	SmilChr01G002888
描述	DEAD-box ATP-dependent RNA helicase 17
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	47538029 - 47543311 / `-`

ID 对照

NCBI Gene ID	`LOC130987942`
GeneID	`130987942`
locus_tag	`-`
NCBI Name	`LOC130987942`
原始查询	`LOC130987942`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DEAD-box ATP-dependent RNA helicase 17
产物	DEAD-box ATP-dependent RNA helicase 17
Arabidopsis	`AT2G40700` (AT2G40700) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818665] identity=64.2; qcov=0.963; evalue=0; confidence=high
Rice	`Os05g0110500` (OsRH17) - identity=62; qcov=0.939; evalue=0; confidence=high
GO	GO:0003676 (nucleic acid binding); GO:0003724 (RNA helicase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0042254 (ribosome biogenesis)
KEGG	-
Pfam	PF00270 (DEAD); PF00271 (Helicase_C); PF04851 (ResIII); PF13959 (CTE_SPB4)
InterPro	-
eggNOG	-
NR	GeneID:130987942

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057767643.1`
2	Nucleolus	核仁	1.00000	`XP_057767643.1`
3	Chromosome	染色体	0.00000	`XP_057767643.1`
4	Centromere	着丝粒	0.00000	`XP_057767643.1`
5	Chromatin	染色质	0.00000	`XP_057767643.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:47538621`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B105,B65
`Chr1:47540272`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B125,B90,B92,B93,D4
`Chr1:47540405`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A10,A24
`Chr1:47541240`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B121,C4,C60
`Chr1:47541382`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr1:47542133`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B27
`Chr1:47542133`	`CT`	`C`	1bp_deletion	CDS_variant	1	B27
`Chr1:47542233`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B112,B91,C44,C86
`Chr1:47542738`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B101,B13,B140
`Chr1:47542739`	`C`	`CA`	1bp_insertion	frameshift_variant	4	B122,B139,B84,B91
`Chr1:47542739`	`C`	`CA`	1bp_insertion	CDS_variant	4	B122,B139,B84,B91

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767643.1

597 aa

298

597

DEAD

ResIII

Helicase_C

CTE_SPB4

PF00270 DEAD 52-240 aa PF04851 ResIII 63-201 aa PF00271 Helicase_C 316-438 aa PF13959 CTE_SPB4 514-562 aa

XP_057767649.1

493 aa

246

493

DEAD

Helicase_C

CTE_SPB4

PF00270 DEAD 12-136 aa PF00271 Helicase_C 212-334 aa PF13959 CTE_SPB4 410-458 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767643.1`	Pfam	`PF00270`	DEAD	Domain	52	240	4.3e-41	141.1	DEAD/DEAH box helicase
`XP_057767643.1`	Pfam	`PF04851`	ResIII	Family	63	201	9.1e-12	45.9	Type III restriction enzyme, res subunit
`XP_057767643.1`	Pfam	`PF00271`	Helicase_C	Domain	316	438	6.7e-24	85.0	Helicase conserved C-terminal domain
`XP_057767643.1`	Pfam	`PF13959`	CTE_SPB4	Domain	514	562	1.3e-18	67.5	ATP-dependent rRNA helicase SPB4-like, C-terminal extension
`XP_057767649.1`	Pfam	`PF00270`	DEAD	Domain	12	136	1.2e-17	64.9	DEAD/DEAH box helicase
`XP_057767649.1`	Pfam	`PF00271`	Helicase_C	Domain	212	334	1.4e-23	83.9	Helicase conserved C-terminal domain
`XP_057767649.1`	Pfam	`PF13959`	CTE_SPB4	Domain	410	458	9.6e-19	67.9	ATP-dependent rRNA helicase SPB4-like, C-terminal extension

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911660.1
GTATCGATACGGGCATGAAAGCCCAAGTTTTATGAATTGCAGAATGTGCTGCTAACAGCTAACCCTCTTAAACCCTAACACTAGAAGGAATCAAAGAAAATCCCCAATTTTGGTGTAGAAAATTGATTCAATTTGAGAAATGGAGCTCGATGCCAAGAGTAATGGTAGAAAAGTGAAATCAGAAAGCAAGAATTCTTCGGAGGTTTTCGCTTCCTGTTCATTCTCCAGTCTCGGCCTCCACCCCGCGTTATGCGACCAAC...

XM_057911666.1
GCTTGTAAATGCCGCTACCGGCACTGGAAAAACAGTGGCCTATCTGGCTCCAATAATTCATATGCTGCAGAGTTATGATGAAAGAATTGAGCGTGCAGATGGCACTTTTGGTATATGAGATTTTGCAGAAGTTGCTACACCGTTTTCATTGGATTGTTCCTGGCTATATCATGGGTGGGGAAAATCGGGGAAAGGAGAAAGCTAGGTTAAGGAAAGGTGTATCTATTCTTGTTGCAACTGCTGGACGTCTATTGGACCAC...

CDS

2 records

下载 CDS FASTA

LOC130987942
ATGGAGCTCGATGCCAAGAGTAATGGTAGAAAAGTGAAATCAGAAAGCAAGAATTCTTCGGAGGTTTTCGCTTCCTGTTCATTCTCCAGTCTCGGCCTCCACCCCGCGTTATGCGACCAACTCAAAGAGAGGCTGGGGTTCGAGGGCCCGACGCTGGTTCAAGCGCAGGCGATTCCCGTCGTACTATCCGGCCGACACGTGCTTGTAAATGCCGCTACCGGCACTGGAAAAACAGTGGCCTATCTGGCTCCAATAATTCA...

LOC130987942
ATGATGAAAGAATTGAGCGTGCAGATGGCACTTTTGGTATATGAGATTTTGCAGAAGTTGCTACACCGTTTTCATTGGATTGTTCCTGGCTATATCATGGGTGGGGAAAATCGGGGAAAGGAGAAAGCTAGGTTAAGGAAAGGTGTATCTATTCTTGTTGCAACTGCTGGACGTCTATTGGACCACTTGAAGAATACTTCATCTTTTGTGCACAAAAATCTTCGCTGGATAATATTTGATGAAGCTGATAGGATTCTAGA...

Protein

2 records

下载 Protein FASTA

XP_057767643.1
MELDAKSNGRKVKSESKNSSEVFASCSFSSLGLHPALCDQLKERLGFEGPTLVQAQAIPVVLSGRHVLVNAATGTGKTVAYLAPIIHMLQSYDERIERADGTFALVLVPTRELCMQVYEILQKLLHRFHWIVPGYIMGGENRGKEKARLRKGVSILVATAGRLLDHLKNTSSFVHKNLRWIIFDEADRILELGYGKDIEEILNCLGTGNLKSGSKDISAVNPEVQKQNLLLSATLNDKVNHLANVSLENPVMIGLDDNMS...

XP_057767649.1
MMKELSVQMALLVYEILQKLLHRFHWIVPGYIMGGENRGKEKARLRKGVSILVATAGRLLDHLKNTSSFVHKNLRWIIFDEADRILELGYGKDIEEILNCLGTGNLKSGSKDISAVNPEVQKQNLLLSATLNDKVNHLANVSLENPVMIGLDDNMSGSRTRNVSLESNGVDIVKESKKTLDASNEEYKLPTQLVQKYIKVPCGSRLVVLLSVLKHLFEIGASQKVVVFFSTCDAVDFHYSLLSEFKWTAMLQTKTEVSQK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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