Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000397`

染色体: Chr06 坐标: 3170318-3174497 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000397`
名称	SmilChr06G000397
描述	uncharacterized SmilChr06G000397
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	3170318 - 3174497 / `-`

ID 对照

NCBI Gene ID	`LOC130987945`
GeneID	`130987945`
locus_tag	`-`
NCBI Name	`LOC130987945`
原始查询	`LOC130987945`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843683]; symbol=AT1G73480; hit=AT1G73480; species=arabidopsis; confidence=high
产物	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843683]; symbol=AT1G73480; hit=AT1G73480; species=arabidopsis; confidence=high
Arabidopsis	`AT1G73480` (AT1G73480) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843683] identity=61.7; qcov=0.99; evalue=2.68e-179; confidence=high
Rice	`Os09g0394700` - identity=62.3; qcov=0.753; evalue=2.68e-138; confidence=high
GO	GO:0016020 (membrane); GO:0016298 (lipase activity)
KEGG	smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:130987945

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057767644.1`
2	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057767644.1`
3	Nucleus	细胞核	0.00000	`XP_057767644.1`
4	Chromosome	染色体	0.00000	`XP_057767644.1`
5	Centromere	着丝粒	0.00000	`XP_057767644.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:3170492`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A10,B119,B72
`Chr6:3170625`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B138,B15,B84,C69
`Chr6:3170627`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B137,B35,C39,C48
`Chr6:3170675`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C74,C79
`Chr6:3170699`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B46,C35,C70
`Chr6:3170706`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr6:3170758`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C22,C65
`Chr6:3170769`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B8,C3,C5
`Chr6:3170780`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,B12,B55,C78
`Chr6:3170782`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B120,B46,C35,C70,C9
`Chr6:3170813`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B120
`Chr6:3170813`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B120

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767644.1

409 aa

204

409

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

PF12146 Hydrolase_4 142-380 aa PF00561 Abhydrolase_1 146-277 aa PF12697 Abhydrolase_6 147-373 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767644.1`	Pfam	`PF12146`	Hydrolase_4	Domain	142	380	1.3e-74	251.2	Serine aminopeptidase, S33
`XP_057767644.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	146	277	3e-20	73.6	alpha/beta hydrolase fold
`XP_057767644.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	147	373	1.6e-12	49.3	Alpha/beta hydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057911661.1
GCTATCCAAATTCTCAATATCATCAACATTCTCGATGCATATCAAACCTTTTTGGAGAAAAATGAGGTGTATTTTAGGTTCTTCAAGAACTACCGAATTTTTTCTCCAACCATTTCGGATTCTGCAATAGTGTGTGAAAACAAAGAATTTGAAAATGGATAAAGAATTTGAAAACCTCTTTTTGATTAAATCATTCAAAAATTGTTTGTAACTCCTCAAAATTTTCTAAACTGCAGAATTCAAATCTTGCATATTTTTTC...

CDS

1 records

下载 CDS FASTA

LOC130987945
ATGGCGGAAGTAGACAGCGACAGAGTCGCCGTAATGTTGACGTCGGGGGCGAGCAGGAGAATCAACACGTTGTTTTCTCTGAGCGTATGGCAAAGTTTGTGGCTCCTGATCAACGCATTATTCTTGATCTTCGTGCTGCCGTTTCGGGAGTGGCGGAAGTGCATGGCGCCGGAGTCGGCGGACAAGGGCGGCGGTGCGAAAGAGGAGAAGTTGTCGGCGCCGCCAGGAAAGGTGTTGAGGATGCCGATGGGAATGTTGCC...

Protein

1 records

下载 Protein FASTA

XP_057767644.1
MAEVDSDRVAVMLTSGASRRINTLFSLSVWQSLWLLINALFLIFVLPFREWRKCMAPESADKGGGAKEEKLSAPPGKVLRMPMGMLPRKSVVDKEVAARRVTAIKRVMEDDGGEKSLREFSMFVSCRGDTIFTQSWTPIKVQVRGVVVILHGLNEHSGRYGDFAKKLNANGLKVYGMDWIGHGGSDGLHAYVPSLDYAVNDMKMFLNKVLAENPKLPCFCFGHSTGGAIVLKAVLDPKVEQRVAGVVLTSPAVGVQPSHP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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