当前解析结果
SmilChr06G000406| 统一新 Gene ID | SmilChr06G000406 |
|---|---|
| 名称 | SmilChr06G000406 |
| 描述 | uncharacterized SmilChr06G000406 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 3308612 - 3319574 / - |
| NCBI Gene ID | LOC130987954 |
|---|---|
| GeneID | 130987954 |
| locus_tag | - |
| NCBI Name | LOC130987954 |
| 原始查询 | LOC130987954 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829968]; symbol=AT4G38120; hit=AT4G38120; species=arabidopsis; confidence=low |
| 产物 | ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829968]; symbol=AT4G38120; hit=AT4G38120; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G38120 (AT4G38120)ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829968] identity=57.1; qcov=0.462; evalue=4.79e-11; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987954 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057767654.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057767653.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057767653.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057767654.1 |
| 5 | Cytosol | 细胞质基质 | 0.20000 | XP_057767655.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:3310431 |
G |
A |
EMS_canonical_SNV | stop_gained | 13 | A9,B26,C1,C17,C20,C21,C28,C31,C4,C40,C57,C6,C78 |
Chr6:3310460 |
G |
GT |
1bp_insertion | frameshift_variant | 11 | B130,B63,B64,B83,B98,C22,C24,C4,C65,C72,C76 |
Chr6:3310483 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:3310486 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A24,B12,B37,B84,C61 |
Chr6:3311243 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B31,B8,C3,C8 |
Chr6:3311248 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B131,B29,B69 |
Chr6:3311311 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | B18,B3,C49,C9 |
Chr6:3311311 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B18,B3,C49,C9 |
Chr6:3311325 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr6:3311394 |
G |
A |
EMS_canonical_SNV | stop_gained | 10 | B11,B120,B21,B41,B59,B89,B9,C3,C54,C74 |
Chr6:3311443 |
A |
AT |
1bp_insertion | stop_gained,frameshift_variant | 1 | C58 |
Chr6:3311443 |
A |
AT |
1bp_insertion | CDS_variant | 1 | C58 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
16 records
下载 cDNA FASTA9 records
下载 CDS FASTA9 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。