Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000416`

染色体: Chr06 坐标: 3446329-3454394 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000416`
名称	SmilChr06G000416
描述	probable alpha-mannosidase At5g13980
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	3446329 - 3454394 / `-`

ID 对照

NCBI Gene ID	`LOC130987966`
GeneID	`130987966`
locus_tag	`-`
NCBI Name	`LOC130987966`
原始查询	`LOC130987966`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable alpha-mannosidase At5g13980
产物	probable alpha-mannosidase At5g13980
Arabidopsis	`AT5G13980` (AT5G13980) Glycosyl hydrolase family 38 protein [Source:NCBI gene (formerly Entrezgene);Acc:831246] identity=66.9; qcov=0.997; evalue=0; confidence=high
Rice	`Os11g0525600` - identity=67.1; qcov=0.985; evalue=0; confidence=high
GO	GO:0004559 (alpha-mannosidase activity); GO:0006013 (mannose metabolic process); GO:0030246 (carbohydrate binding)
KEGG	smil00511 (Other glycan degradation - Salvia miltiorrhiza (redroot sage))
Pfam	PF01074 (Glyco_hydro_38N); PF07748 (Glyco_hydro_38C); PF09261 (Alpha-mann_mid); PF17677 (Glyco_hydro38C2); PF21260 (Laman-like_dom)
InterPro	-
eggNOG	-
NR	GeneID:130987966

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.60000	`XP_057767680.1`
2	Secreted	分泌到胞外	0.40000	`XP_057767682.1`
3	Endoplasmic reticulum	内质网	0.20000	`XP_057767680.1`
4	Cell wall	细胞壁	0.20000	`XP_057767682.1`
5	Lysosome	溶酶体	0.20000	`XP_057767680.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:3446758`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B44,C37,C87,D6
`Chr6:3446778`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:3446790`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B44,C37,C87,D6
`Chr6:3447005`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C78
`Chr6:3447211`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C17,C63
`Chr6:3447478`	`CA`	`C`	1bp_deletion	frameshift_variant	18	A16,A18,A21,B110,B28,B3,B33,B37,B38,B39,B46,B62,C12,C17,C62,C63,C83,C84
`Chr6:3447517`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B103,B115
`Chr6:3447933`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:3448121`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:3448136`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A14,B10,B130,B21,B22
`Chr6:3448181`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr6:3448872`	`C`	`CT`	1bp_insertion	frameshift_variant	1	B26

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767680.1

1040 aa

520

1040

Glyco_hydro_38N

Alpha-mann_mid

Laman-like_dom

Glyco_hydro_38C

Glyco_hydro38C2

PF01074 Glyco_hydro_38N 37-352 aa PF09261 Alpha-mann_mid 356-447 aa PF21260 Laman-like_dom 548-574 aa PF07748 Glyco_hydro_38C 602-813 aa PF17677 Glyco_hydro38C2 923-1029 aa

XP_057767681.1

1040 aa

520

1040

Glyco_hydro_38N

Alpha-mann_mid

Laman-like_dom

Glyco_hydro_38C

Glyco_hydro38C2

PF01074 Glyco_hydro_38N 37-352 aa PF09261 Alpha-mann_mid 356-447 aa PF21260 Laman-like_dom 548-574 aa PF07748 Glyco_hydro_38C 602-813 aa PF17677 Glyco_hydro38C2 923-1029 aa

XP_057767682.1

1011 aa

506

1011

Glyco_hydro_38N

Alpha-mann_mid

Laman-like_dom

Glyco_hydro_38C

Glyco_hydro38C2

PF01074 Glyco_hydro_38N 37-352 aa PF09261 Alpha-mann_mid 356-447 aa PF21260 Laman-like_dom 548-574 aa PF07748 Glyco_hydro_38C 602-813 aa PF17677 Glyco_hydro38C2 894-1000 aa

XP_057767683.1

1011 aa

506

1011

Glyco_hydro_38N

Alpha-mann_mid

Laman-like_dom

Glyco_hydro_38C

Glyco_hydro38C2

PF01074 Glyco_hydro_38N 37-352 aa PF09261 Alpha-mann_mid 356-447 aa PF21260 Laman-like_dom 548-574 aa PF07748 Glyco_hydro_38C 602-813 aa PF17677 Glyco_hydro38C2 894-1000 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767680.1`	Pfam	`PF01074`	Glyco_hydro_38N	Domain	37	352	1.4e-83	281.2	Glycosyl hydrolases family 38 N-terminal domain
`XP_057767680.1`	Pfam	`PF09261`	Alpha-mann_mid	Domain	356	447	1e-20	74.3	Alpha mannosidase middle domain
`XP_057767680.1`	Pfam	`PF21260`	Laman-like_dom	Domain	548	574	4.6e-08	33.9	Lysosomal alpha-mannosidase-like, central domain
`XP_057767680.1`	Pfam	`PF07748`	Glyco_hydro_38C	Domain	602	813	3e-43	149.2	Glycosyl hydrolases family 38 C-terminal domain
`XP_057767680.1`	Pfam	`PF17677`	Glyco_hydro38C2	Domain	923	1029	3.8e-07	30.8	Glycosyl hydrolases family 38 C-terminal beta sandwich domain
`XP_057767681.1`	Pfam	`PF01074`	Glyco_hydro_38N	Domain	37	352	1.4e-83	281.2	Glycosyl hydrolases family 38 N-terminal domain
`XP_057767681.1`	Pfam	`PF09261`	Alpha-mann_mid	Domain	356	447	1e-20	74.3	Alpha mannosidase middle domain
`XP_057767681.1`	Pfam	`PF21260`	Laman-like_dom	Domain	548	574	4.6e-08	33.9	Lysosomal alpha-mannosidase-like, central domain
`XP_057767681.1`	Pfam	`PF07748`	Glyco_hydro_38C	Domain	602	813	3e-43	149.2	Glycosyl hydrolases family 38 C-terminal domain
`XP_057767681.1`	Pfam	`PF17677`	Glyco_hydro38C2	Domain	923	1029	3.8e-07	30.8	Glycosyl hydrolases family 38 C-terminal beta sandwich domain
`XP_057767682.1`	Pfam	`PF01074`	Glyco_hydro_38N	Domain	37	352	1.3e-83	281.3	Glycosyl hydrolases family 38 N-terminal domain
`XP_057767682.1`	Pfam	`PF09261`	Alpha-mann_mid	Domain	356	447	1e-20	74.3	Alpha mannosidase middle domain
`XP_057767682.1`	Pfam	`PF21260`	Laman-like_dom	Domain	548	574	4.5e-08	33.9	Lysosomal alpha-mannosidase-like, central domain
`XP_057767682.1`	Pfam	`PF07748`	Glyco_hydro_38C	Domain	602	813	2.9e-43	149.3	Glycosyl hydrolases family 38 C-terminal domain
`XP_057767682.1`	Pfam	`PF17677`	Glyco_hydro38C2	Domain	894	1000	3.6e-07	30.9	Glycosyl hydrolases family 38 C-terminal beta sandwich domain
`XP_057767683.1`	Pfam	`PF01074`	Glyco_hydro_38N	Domain	37	352	1.3e-83	281.3	Glycosyl hydrolases family 38 N-terminal domain
`XP_057767683.1`	Pfam	`PF09261`	Alpha-mann_mid	Domain	356	447	1e-20	74.3	Alpha mannosidase middle domain
`XP_057767683.1`	Pfam	`PF21260`	Laman-like_dom	Domain	548	574	4.5e-08	33.9	Lysosomal alpha-mannosidase-like, central domain
`XP_057767683.1`	Pfam	`PF07748`	Glyco_hydro_38C	Domain	602	813	2.9e-43	149.3	Glycosyl hydrolases family 38 C-terminal domain
`XP_057767683.1`	Pfam	`PF17677`	Glyco_hydro38C2	Domain	894	1000	3.6e-07	30.9	Glycosyl hydrolases family 38 C-terminal beta sandwich domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057911698.1
GTCGTTCTCACGTCTCACTCCATCCCAACACTTCACCTCCAAAATCCAATTTTCAAGTCAAAAATTTTATCTTTTGCGGCAACCCTTATCTGCAATTCAACATAAACCCATGTTTTGTTCTTAGCTACCTACTACATTCCGCTAACAATGATTACATTTATGGGACAAGAGTAGCTTCCCCATTTCTTCATCTGGAGATCCATTTTCTTGTCCGGTTTCCTGGGCTTGGTCTATTTATTCTGCTGCTTCCTGGGTCGACC...

XM_057911697.1
GTCGTTCTCACGTCTCACTCCATCCCAACACTTCACCTCCAAAATCCAATTTTCAAGTCAAAAATTTTATCTTTTGCGGCAACCCTTATCTGCAATTCAACATAAACCCATGTTTTGTTCTTAGCTACCTACTACATTCCGCTAACAATGATTACATTTATGGGACAAGAGTAGCTTCCCCATTTCTTCATCTGGAGATCCATTTTCTTGTCCGGTTTCCTGGGCTTGGTCTATTTATTCTGCTGCTTCCTGGGTCGACC...

CDS

4 records

下载 CDS FASTA

LOC130987966
ATGGCGGCGTTCCGGGCTTTAGCGGTTGTCTTGAGTGTGTGGTGTGTGTGTTTCTTGGTGGAGGGGAAGTACATGGTTTACAACACCTCGGGAGGCGTTGTGCCCGGCAAGATTAACGTGCATTTGGTTGCTCACACGCATGATGATGTTGGGTGGTTGAAGACTGTTGACCAATACTATGTTGGATCGAATAACTCCATTCAGGTAGCATGTGTGCAGAATGTATTGGATTCATTGATTCCAGCGTTGTTGGCTGATGA...

Protein

4 records

下载 Protein FASTA

XP_057767680.1
MAAFRALAVVLSVWCVCFLVEGKYMVYNTSGGVVPGKINVHLVAHTHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSLIPALLADENRKFIYVEQAFFQRWWRQQSDGMKETVKMLVSSGQLEFINGGMCMHDEAATHYIDMIDQTTLGHWYIKRDFNVTPRIGWQIDPFGHSAVQAYLLGAEVGFDALYFARIDYQDRAKRSAEKKLEVIWQGSKSRGSSSQIFSGAFYAGNYEPPTGFYYEINDDSPIVQDDIGLFD...

XP_057767681.1
MAAFRALAVVLSVWCVCFLVEGKYMVYNTSGGVVPGKINVHLVAHTHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSLIPALLADENRKFIYVEQAFFQRWWRQQSDGMKETVKMLVSSGQLEFINGGMCMHDEAATHYIDMIDQTTLGHWYIKRDFNVTPRIGWQIDPFGHSAVQAYLLGAEVGFDALYFARIDYQDRAKRSAEKKLEVIWQGSKSRGSSSQIFSGAFYAGNYEPPTGFYYEINDDSPIVQDDIGLFD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器