Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000451`

染色体: Chr06 坐标: 3651918-3659196 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000451`
名称	SmilChr06G000451
描述	ribonuclease TUDOR 1
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	3651918 - 3659196 / `-`

ID 对照

NCBI Gene ID	`LOC130988002`
GeneID	`130988002`
locus_tag	`-`
NCBI Name	`LOC130988002`
原始查询	`LOC130988002`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ribonuclease TUDOR 1
产物	ribonuclease TUDOR 1
Arabidopsis	`AT5G07350` (Tudor1) TUDOR-SN protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:830626] identity=68.5; qcov=1; evalue=0; confidence=high
Rice	`Os02g0523500` (OsTSN) - identity=67; qcov=1; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0004518 (nuclease activity); GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0006402 (mRNA catabolic process); GO:0016442 (RISC complex); GO:0031047 (regulatory ncRNA-mediated gene silencing)
KEGG	-
Pfam	PF00565 (SNase); PF00567 (TUDOR)
InterPro	-
eggNOG	-
NR	GeneID:130988002

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057767720.1`
2	Cytoplasmic granule	细胞质颗粒	0.40000	`XP_057767720.1`
3	Nucleus	细胞核	0.20000	`XP_057767720.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057767720.1`
5	Stress granule	Stress granule	0.20000	`XP_057767720.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:3652167`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B29,C44,D8
`Chr6:3652614`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr6:3652715`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr6:3652801`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr6:3652821`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A9,B72
`Chr6:3654059`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B55,C23,C33
`Chr6:3654111`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A13,A16,B19,B33,B69
`Chr6:3654376`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr6:3654573`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A9,B72
`Chr6:3654726`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B36
`Chr6:3654726`	`AC`	`A`	1bp_deletion	CDS_variant	1	B36
`Chr6:3654763`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B52,B91

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767720.1

987 aa

494

987

SNase

TUDOR

SNase

PF00565 SNase 40-148 aa PF00565 SNase 268-363 aa PF00565 SNase 410-552 aa PF00565 SNase 614-712 aa PF00567 TUDOR 731-854 aa PF00565 SNase 862-966 aa

XP_057767721.1

987 aa

494

987

SNase

TUDOR

SNase

PF00565 SNase 40-148 aa PF00565 SNase 268-363 aa PF00565 SNase 410-552 aa PF00565 SNase 614-712 aa PF00567 TUDOR 731-854 aa PF00565 SNase 862-966 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767720.1`	Pfam	`PF00565`	SNase	Domain	40	148	5.4e-63	210.8	Staphylococcal nuclease homologue
`XP_057767720.1`	Pfam	`PF00565`	SNase	Domain	268	363	5.4e-63	210.8	Staphylococcal nuclease homologue
`XP_057767720.1`	Pfam	`PF00565`	SNase	Domain	410	552	5.4e-63	210.8	Staphylococcal nuclease homologue
`XP_057767720.1`	Pfam	`PF00565`	SNase	Domain	614	712	5.4e-63	210.8	Staphylococcal nuclease homologue
`XP_057767720.1`	Pfam	`PF00567`	TUDOR	Domain	731	854	1.5e-22	80.6	Tudor domain
`XP_057767720.1`	Pfam	`PF00565`	SNase	Domain	862	966	5.4e-63	210.8	Staphylococcal nuclease homologue
`XP_057767721.1`	Pfam	`PF00565`	SNase	Domain	40	148	5.4e-63	210.8	Staphylococcal nuclease homologue
`XP_057767721.1`	Pfam	`PF00565`	SNase	Domain	268	363	5.4e-63	210.8	Staphylococcal nuclease homologue
`XP_057767721.1`	Pfam	`PF00565`	SNase	Domain	410	552	5.4e-63	210.8	Staphylococcal nuclease homologue
`XP_057767721.1`	Pfam	`PF00565`	SNase	Domain	614	712	5.4e-63	210.8	Staphylococcal nuclease homologue
`XP_057767721.1`	Pfam	`PF00567`	TUDOR	Domain	731	854	1.5e-22	80.6	Tudor domain
`XP_057767721.1`	Pfam	`PF00565`	SNase	Domain	862	966	5.4e-63	210.8	Staphylococcal nuclease homologue

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911737.1
TGGCACATTCAGTAATTCTGGCAAAAAGTGAGGTGATTCAGTTGAGCCCCGCTGCCCCTTGCTATAAAAGGCCAATCTTTACATCGACATTGATATATATGCTTTCCTCACTCCGCCGTCGTCTCTCTCTTGAACACTTTTTTCTCAAATTTCGCTCCAAATTGAGTAAAAAAACTGAAAGGAGACCTCCGTTTCAGTTTTTTTGAAATTAACTGGTTCGATTTGATGAGTTCATCGTAATCGAATCGGATATCGGATCG...

XM_057911738.1
GCGTTGAGTTGTAGATCTCTATCATTTTGCTGTTGAAATGGCATCAACAGCTGGAGCCACAGGATGGTTGAGGGGAATAGTAAAAGCTGTTCCATCTGGTGACTGCTTGGTGATAATGGGGAACACAAAGGCTGAGATTCCCCCAGAGAAGTCAATCACTTTGTCTTCATTGATGGCTCCTAAGTTGGCTCCCCGAAGAGGCGGGCTTGATGAACCATTTGCATGGCAGAGCAGAGAATTCTTGAGGAAGCTTTGTATTG...

CDS

2 records

下载 CDS FASTA

LOC130988002
ATGGCATCAACAGCTGGAGCCACAGGATGGTTGAGGGGAATAGTAAAAGCTGTTCCATCTGGTGACTGCTTGGTGATAATGGGGAACACAAAGGCTGAGATTCCCCCAGAGAAGTCAATCACTTTGTCTTCATTGATGGCTCCTAAGTTGGCTCCCCGAAGAGGCGGGCTTGATGAACCATTTGCATGGCAGAGCAGAGAATTCTTGAGGAAGCTTTGTATTGGAAAGGAGGTCACTTTTAGAGTGGACTACACTGTACC...

Protein

2 records

下载 Protein FASTA

XP_057767720.1
MASTAGATGWLRGIVKAVPSGDCLVIMGNTKAEIPPEKSITLSSLMAPKLAPRRGGLDEPFAWQSREFLRKLCIGKEVTFRVDYTVPSINREFGSVFLGDKNVALLVVAGGWAKVREQSQQKGEASPYLTDLLRLEEQAKQQGLGRWNRTPGAAEAAIRDLPPSAVSDPSNFDAMALLAAKKGSPLEAIVDQCRDGSTIRVYLLPDFQYVQVFVAGIQAPSPGRRAAAESAIATEVVSTEQNGDSTVEGRAPLTSAQRLA...

XP_057767721.1
MASTAGATGWLRGIVKAVPSGDCLVIMGNTKAEIPPEKSITLSSLMAPKLAPRRGGLDEPFAWQSREFLRKLCIGKEVTFRVDYTVPSINREFGSVFLGDKNVALLVVAGGWAKVREQSQQKGEASPYLTDLLRLEEQAKQQGLGRWNRTPGAAEAAIRDLPPSAVSDPSNFDAMALLAAKKGSPLEAIVDQCRDGSTIRVYLLPDFQYVQVFVAGIQAPSPGRRAAAESAIATEVVSTEQNGDSTVEGRAPLTSAQRLA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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