当前解析结果
SmilChr06G000482| 统一新 Gene ID | SmilChr06G000482 |
|---|---|
| 名称 | SmilChr06G000482 |
| 描述 | rosmarinate synthase-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 3932285 - 3934324 / + |
| NCBI Gene ID | LOC130988036 |
|---|---|
| GeneID | 130988036 |
| locus_tag | - |
| NCBI Name | LOC130988036 |
| 原始查询 | LOC130988036 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | rosmarinate synthase-like |
| 产物 | rosmarinate synthase-like |
| Arabidopsis | AT5G48930 (HCT)hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase [Source:NCBI gene (formerly Entrezgene);Acc:834951] identity=50.92; qcov=0.966; evalue=6.59e-153; confidence=high |
| Rice | Os04g0500700 (OsHCT1)hydroxycinnamoyltransferase 1-like [Source:NCBI gene (formerly Entrezgene);Acc:4336306] identity=47.98; qcov=0.966; evalue=6.51e-137; confidence=high |
| GO | GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups) |
| KEGG | smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00941 (Flavonoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00945 (Stilbenoid, diarylheptanoid and gingerol biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF02458 (Transferase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988036 |
| Rank | 定位位置 | 中文 | 五折投票比例 | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057767767.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057767767.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:3932471 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C60,C62 |
Chr6:3932552 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | A18 |
Chr6:3932552 |
CT |
C |
1bp_deletion | CDS_variant | 1 | A18 |
Chr6:3932556 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr6:3932624 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,C58 |
Chr6:3932727 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr6:3932745 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr6:3933327 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B117,B34,C3 |
Chr6:3933386 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A14,A24,B76,C34,C6 |
Chr6:3933439 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A19,B47,B90,D6,D8 |
Chr6:3933455 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B101,B123,B19 |
Chr6:3933483 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,B33 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767767.1PF02458
Transferase 3-424 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767767.1 |
Pfam | PF02458 |
Transferase | Family | 3 | 424 | 1.1e-92 | 311.7 | Transferase family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。