Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000493`

染色体: Chr06 坐标: 4037201-4038940 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000493`
名称	SmilChr06G000493
描述	mitogen-activated protein kinase kinase kinase 20-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	4037201 - 4038940 / `+`

ID 对照

NCBI Gene ID	`LOC130988046`
GeneID	`130988046`
locus_tag	`-`
NCBI Name	`LOC130988046`
原始查询	`LOC130988046`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mitogen-activated protein kinase kinase kinase 20-like
产物	mitogen-activated protein kinase kinase kinase 20-like
Arabidopsis	`AT4G36950` (MAPKKK21) mitogen-activated protein kinase kinase kinase 21 [Source:NCBI gene (formerly Entrezgene);Acc:3770588] identity=48.5; qcov=0.683; evalue=1.58e-77; confidence=high
Rice	`Os02g0322400` - identity=35.4; qcov=0.782; evalue=3.16e-49; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:130988046

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057767775.1`
2	Cytosol	细胞质基质	0.40000	`XP_057767775.1`
3	Chromosome	染色体	0.00000	`XP_057767775.1`
4	Centromere	着丝粒	0.00000	`XP_057767775.1`
5	Chromatin	染色质	0.00000	`XP_057767775.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:4037744`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr6:4037775`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B139,C42
`Chr6:4037784`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr6:4037812`	`GCC`	`G`	2bp_deletion	frameshift_variant	3	B123,B95,D10
`Chr6:4037812`	`GCC`	`G`	2bp_deletion	CDS_variant	3	B123,B95,D10
`Chr6:4037879`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A9,B22,B89,C1,C44
`Chr6:4037882`	`G`	`GA`	1bp_insertion	frameshift_variant	201	A1,A10,A13,A14,A15,A16,A18,A2,A20,A23,A24,A25,A4,A5,A6,A8,A9,B1,B10,B100,B102,B103,B106,B107,B109,B11,B110,B112,B113,B114,B115,B118,B120,B121,B123,B125,B126,B128,B130,B131,B132,B133,B134,B135,B137,B139,B15,B16,B17,B18,B19,B21,B22,B23,B24,B25,B27,B28,B29,B3,B30,B31,B32,B33,B34,B36,B37,B38,B39,B4,B41,B42,B43,B44,B47,B49,B5,B51,B53,B55,B56,B58,B59,B6,B60,B61,B62,B63,B64,B65,B67,B68,B69,B7,B70,B72,B73,B74,B75,B76,B77,B79,B80,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,C1,C10,C11,C12,C13,C15,C16,C17,C18,C19,C20,C21,C22,C23,C25,C26,C27,C28,C29,C3,C30,C31,C33,C34,C35,C36,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C53,C54,C56,C57,C59,C60,C61,C63,C64,C65,C66,C67,C69,C7,C71,C72,C73,C74,C75,C76,C78,C79,C8,C80,C81,C82,C84,C85,C86,C87,C9,D11,D2,D3,D5,D6,D7,D8,D9
`Chr6:4037884`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A3,C20
`Chr6:4037888`	`AG`	`A`	1bp_deletion	frameshift_variant	201	A1,A10,A13,A14,A15,A16,A18,A2,A23,A24,A25,A4,A5,A6,A8,A9,B1,B10,B100,B102,B103,B106,B107,B109,B11,B110,B112,B113,B114,B115,B118,B120,B121,B123,B124,B125,B126,B128,B130,B131,B132,B133,B134,B135,B137,B139,B15,B16,B17,B18,B19,B21,B22,B23,B24,B25,B27,B28,B29,B3,B30,B31,B32,B33,B34,B36,B37,B38,B39,B4,B41,B42,B43,B44,B47,B49,B5,B51,B53,B55,B56,B58,B59,B6,B60,B61,B62,B63,B64,B65,B67,B68,B69,B7,B70,B72,B73,B74,B75,B76,B77,B79,B80,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,C1,C10,C11,C12,C13,C15,C16,C17,C18,C19,C20,C21,C22,C23,C25,C26,C27,C28,C29,C3,C30,C31,C33,C34,C35,C36,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C53,C54,C56,C57,C59,C60,C61,C63,C64,C65,C66,C67,C69,C7,C71,C72,C73,C74,C75,C76,C78,C79,C8,C80,C81,C82,C84,C85,C86,C87,C9,D11,D2,D3,D5,D6,D7,D8,D9
`Chr6:4037956`	`A`	`AAC`	2bp_insertion	frameshift_variant	186	A1,A10,A13,A14,A15,A16,A2,A20,A23,A24,A25,A3,A4,A5,A8,A9,B1,B100,B101,B102,B103,B105,B107,B109,B11,B110,B112,B113,B114,B118,B120,B123,B125,B126,B128,B130,B131,B132,B133,B134,B135,B136,B139,B14,B16,B17,B18,B19,B22,B23,B27,B28,B3,B30,B31,B32,B34,B35,B37,B38,B39,B4,B40,B41,B42,B44,B47,B48,B49,B5,B50,B51,B53,B54,B55,B58,B59,B6,B60,B61,B63,B64,B65,B66,B67,B69,B7,B70,B72,B73,B74,B75,B76,B77,B79,B80,B82,B83,B84,B85,B86,B87,B88,B9,B90,B91,B92,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C16,C17,C18,C20,C21,C26,C27,C28,C29,C3,C30,C31,C33,C34,C35,C36,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C49,C5,C50,C51,C53,C54,C55,C56,C57,C59,C60,C61,C63,C64,C65,C66,C67,C69,C7,C71,C72,C73,C74,C76,C78,C8,C80,C81,C82,C84,C85,C87,C9,D2,D3,D4,D5,D6,D7,D9
`Chr6:4037957`	`G`	`GA`	1bp_insertion	frameshift_variant	187	A1,A10,A13,A14,A15,A16,A2,A20,A23,A24,A25,A3,A4,A5,A8,A9,B1,B100,B101,B102,B103,B105,B107,B109,B11,B110,B112,B113,B114,B118,B120,B123,B125,B126,B128,B130,B131,B132,B133,B134,B135,B136,B139,B14,B16,B17,B18,B19,B22,B23,B27,B28,B3,B30,B31,B32,B34,B35,B37,B38,B39,B4,B40,B41,B42,B44,B47,B48,B49,B5,B50,B51,B53,B54,B55,B58,B59,B6,B60,B61,B63,B64,B65,B66,B67,B69,B7,B70,B72,B73,B74,B75,B76,B77,B79,B80,B82,B83,B84,B85,B86,B87,B88,B9,B90,B91,B92,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C16,C17,C18,C20,C21,C26,C27,C28,C29,C3,C30,C31,C33,C34,C35,C36,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C49,C5,C50,C51,C53,C54,C55,C56,C57,C59,C60,C61,C63,C64,C65,C66,C67,C69,C7,C71,C72,C73,C74,C76,C78,C79,C8,C80,C81,C82,C84,C85,C87,C9,D2,D3,D4,D5,D6,D7,D9
`Chr6:4038012`	`TG`	`T`	1bp_deletion	frameshift_variant	100	A1,A10,A15,A23,A25,A4,B1,B100,B102,B103,B11,B112,B113,B114,B118,B123,B132,B134,B136,B139,B16,B17,B19,B22,B28,B31,B34,B36,B37,B38,B39,B4,B41,B42,B43,B44,B49,B51,B55,B58,B6,B60,B63,B64,B65,B66,B67,B69,B73,B74,B75,B76,B77,B79,B80,B83,B86,B90,B92,B95,B97,C15,C18,C20,C21,C28,C29,C3,C30,C31,C36,C38,C39,C43,C44,C46,C49,C50,C54,C56,C60,C63,C64,C65,C66,C67,C69,C7,C71,C72,C75,C76,C78,C79,C80,C81,C82,C87,D7,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767775.1

404 aa

202

404

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 22-291 aa PF07714 PK_Tyr_Ser-Thr 23-283 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767775.1`	Pfam	`PF00069`	Pkinase	Domain	22	291	1.7e-50	172.6	Protein kinase domain
`XP_057767775.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	23	283	3.6e-26	92.7	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057911792.1
CGACATTATGCGCAACTTCTTTCCTCTTATTATTATTATTATTGTTAATTTTTTTTTATCCACCCATCAACGAAACGCGGCTGTGTTTTATTCTTCACAAATCCCACACAAGAAGAAACCGCAAAGAAACCCTCCACCACTTGTTCATTCTTTTTTGTAAACCCTAAATAAACATTCTTACTTCAACGAAAAAAAAAAAAGAGAAAAGAGGGGAAAAAGCTCATCAACTGAATTGAGTTTTGTCCCCGTTGTTCTTCCGT...

CDS

1 records

下载 CDS FASTA

LOC130988046
ATGGTTGTCAAGGGAGAAGAAATTGGGAATGAATATGGAGATGGGGTGGCGTGGATTAGGGGTCCAGTGATCGGAAAAGGGAGTTTTGGGTGTGTTTATTTGGCTAGTTTGAGGAATCCGAGATCGAAATACAGCTGTTTCCCTTCTGTGATGGCTGTGAAATCGGCGGAGGTTTCGGCATCTGGTTCGATTCAGAAGGAGAGGGAGGTTCTGAGCAATGTCAAAGGCTGCAACGACATAATCAGGTGCTTCGGCGAGGA...

Protein

1 records

下载 Protein FASTA

XP_057767775.1
MVVKGEEIGNEYGDGVAWIRGPVIGKGSFGCVYLASLRNPRSKYSCFPSVMAVKSAEVSASGSIQKEREVLSNVKGCNDIIRCFGEETTVGEGGAMVFNLLLEYGSGGTLAQRIRNSGGKGLPEFETKVFVKCLLRGLNHIHSIGYVHCDLKPENILLVPDARGRGLRAKIGDFGLAKRAEQSKKRKMEPYWRGTPMYLPPEAVTENLQEAPSDVWALGCIVLEMLTGKPPWSEDAELTGDDLIRKIGEGRESPRIPNGI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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