当前解析结果
SmilChr06G000534| 统一新 Gene ID | SmilChr06G000534 |
|---|---|
| 名称 | SmilChr06G000534 |
| 描述 | uncharacterized SmilChr06G000534 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 4450284 - 4453710 / + |
| NCBI Gene ID | LOC130988077 |
|---|---|
| GeneID | 130988077 |
| locus_tag | - |
| NCBI Name | LOC130988077 |
| 原始查询 | LOC130988077 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0651300; species=rice; confidence=low |
| 产物 | hit=Os06g0651300; species=rice; confidence=low |
| Arabidopsis | AT2G24030 (AT2G24030)zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:816937] identity=45.3; qcov=0.166; evalue=6.23e-07; confidence=weak |
| Rice | Os06g0651300- identity=29.3; qcov=0.507; evalue=6.25e-10; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF12171 (zf-C2H2_jaz); PF12756 (zf-C2H2_2); PF12874 (zf-met) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988077 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057767816.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057767816.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057767816.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057767816.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057767816.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:4451196 |
A |
ACC |
2bp_insertion | frameshift_variant | 1 | B89 |
Chr6:4451196 |
A |
ACC |
2bp_insertion | CDS_variant | 1 | B89 |
Chr6:4451356 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A22,B113,B132,B59 |
Chr6:4451401 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr6:4451495 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B33,B44 |
Chr6:4451497 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B51,B6,C35,C67 |
Chr6:4451517 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:4451648 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C25 |
Chr6:4452938 |
A |
AG |
1bp_insertion | frameshift_variant | 74 | A10,A14,A18,A19,A20,A3,A4,B102,B106,B111,B115,B119,B120,B127,B130,B134,B135,B136,B137,B2,B21,B24,B26,B29,B33,B4,B42,B43,B44,B47,B50,B51,B53,B58,B64,B65,B66,B69,B71,B73,B74,B76,B87,B90,B92,B94,B99,C10,C13,C14,C18,C22,C28,C37,C38,C42,C44,C45,C47,C48,C54,C6,C60,C61,C62,C7,C73,C81,C87,D1,D4,D6,D8,D9 |
Chr6:4452991 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B66,B76,B94 |
Chr6:4453147 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A20,B137,C28,C73 |
Chr6:4453162 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767816.1PF12756
zf-C2H2_2 244-284 aa
PF12874
zf-met 257-281 aa
PF12874
zf-met 371-395 aa
PF12171
zf-C2H2_jaz 371-396 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767816.1 |
Pfam | PF12756 |
zf-C2H2_2 | Family | 244 | 284 | 6.1e-06 | 27.1 | C2H2 type zinc-finger (2 copies) |
XP_057767816.1 |
Pfam | PF12874 |
zf-met | Domain | 257 | 281 | 3.5e-17 | 62.8 | Zinc-finger of C2H2 type |
XP_057767816.1 |
Pfam | PF12874 |
zf-met | Domain | 371 | 395 | 3.5e-17 | 62.8 | Zinc-finger of C2H2 type |
XP_057767816.1 |
Pfam | PF12171 |
zf-C2H2_jaz | Family | 371 | 396 | 1.6e-12 | 47.9 | Zinc-finger double-stranded RNA-binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。