Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002910`

染色体: Chr01 坐标: 47806150-47818485 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002910`
名称	SmilChr01G002910
描述	phosphoinositide phosphatase SAC4-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	47806150 - 47818485 / `-`

ID 对照

NCBI Gene ID	`LOC130988085`
GeneID	`130988085`
locus_tag	`-`
NCBI Name	`LOC130988085`
原始查询	`LOC130988085`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphoinositide phosphatase SAC4-like
产物	phosphoinositide phosphatase SAC4-like
Arabidopsis	`AT5G20840` (AT5G20840) Phosphoinositide phosphatase family protein [Source:NCBI gene (formerly Entrezgene);Acc:832207] identity=59.9; qcov=0.985; evalue=0; confidence=high
Rice	`Os03g0182400` - identity=57; qcov=0.976; evalue=0; confidence=high
GO	GO:0043231 (intracellular membrane-bounded organelle); GO:0043813 (phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity); GO:0046856 (phosphatidylinositol dephosphorylation)
KEGG	smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF02383 (Syja_N)
InterPro	-
eggNOG	-
NR	GeneID:130988085

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057767829.1`
2	Cytosol	细胞质基质	1.00000	`XP_057767829.1`
3	Nucleus	细胞核	0.00000	`XP_057767829.1`
4	Chromosome	染色体	0.00000	`XP_057767829.1`
5	Centromere	着丝粒	0.00000	`XP_057767829.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:47807186`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B42,B43,C70,C85,C87
`Chr1:47810653`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr1:47811603`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B103
`Chr1:47811603`	`AC`	`A`	1bp_deletion	CDS_variant	1	B103
`Chr1:47811605`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr1:47811606`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B14,B57
`Chr1:47811702`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr1:47811735`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B107,B66,C5
`Chr1:47813058`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr1:47813243`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr1:47814662`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:47816676`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767829.1

846 aa

423

846

Syja_N

PF02383 Syja_N 105-403 aa

XP_057767835.1

846 aa

423

846

Syja_N

PF02383 Syja_N 105-403 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767829.1`	Pfam	`PF02383`	Syja_N	Family	105	403	1.7e-83	281.2	SacI homology domain
`XP_057767835.1`	Pfam	`PF02383`	Syja_N	Family	105	403	1.7e-83	281.2	SacI homology domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911846.1
TCAACTAAATAAGTTGTGGTTTTCATTTTGCCTCTGCAGATCCAAGCTGTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTATATCTTTATCTCTCTTAAATTTTTTGGAATCAATCAAAAACTATAACCACTCTCTCTCTGTACATCATCATCATTTATCATTATCATCATCATCATCATTTGCATCAAACAGAAATTTTCTTCTCGCATCACGTCCACCAATTCCCTTTTGTTCCTTC...

XM_057911852.1
AATAAGTTGTGGTTTTCATTTTGCCTCTGCAGATCCAAGCTGTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTATATCTTTATCTCTCTTAAATTTTTTGGAATCAATCAAAAACTATAACCACTCTCTCTCTGTACATCATCATCATTTATCATTATCATCATCATCATCATTTGCATCAAACAGAAATTTTCTTCTCGCATCACGTCCACCAATTCCCTTTTGTTCCTTCTCTCGGC...

CDS

2 records

下载 CDS FASTA

LOC130988085
ATGGAAGATGTGTCGGAAATTGTACAGCTACAACAGCATGAAGTTCAGCCTGATTCTCCACCTCCTGCTCCGCCTGCTGAGGGGTTTATGCAGAAATTCAGACTCTATGAGACTCGATCGAATTTTTATATGGTAGGAAGGGACAAAACTAGAACTTTTTGGAAAATTTTGAAAATTGATAGGTTGGAACCATCAGAGCTTAACATTCGTGAAGATTCTGCCACATATACTGAGCGGGAGTGCTCAGATCTATTAAGAAG...

Protein

2 records

下载 Protein FASTA

XP_057767829.1
MEDVSEIVQLQQHEVQPDSPPPAPPAEGFMQKFRLYETRSNFYMVGRDKTRTFWKILKIDRLEPSELNIREDSATYTERECSDLLRRIHEGNRATGGLKFVTTCYGIVGFIKFLGPYYMVLITKRRQIGVICGHNVYAISKSEIIPLPNSAVRAGMVDYKNEYRYKKLLCMVDLTKDFYFSYSYHVMRSLQRNMCDNETGQVLYETMFVWNEFLTRGIRNILQNTLWTVALVYGFFKQATLSISGRDLKLTLIARRSRHY...

XP_057767835.1
MEDVSEIVQLQQHEVQPDSPPPAPPAEGFMQKFRLYETRSNFYMVGRDKTRTFWKILKIDRLEPSELNIREDSATYTERECSDLLRRIHEGNRATGGLKFVTTCYGIVGFIKFLGPYYMVLITKRRQIGVICGHNVYAISKSEIIPLPNSAVRAGMVDYKNEYRYKKLLCMVDLTKDFYFSYSYHVMRSLQRNMCDNETGQVLYETMFVWNEFLTRGIRNILQNTLWTVALVYGFFKQATLSISGRDLKLTLIARRSRHY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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