Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000576`

染色体: Chr06 坐标: 4903775-4908107 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000576`
名称	SmilChr06G000576
描述	two-component response regulator ARR12-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	4903775 - 4908107 / `-`

ID 对照

NCBI Gene ID	`LOC130988118`
GeneID	`130988118`
locus_tag	`-`
NCBI Name	`LOC130988118`
原始查询	`LOC130988118`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	two-component response regulator ARR12-like
产物	two-component response regulator ARR12-like
Arabidopsis	`AT2G25180` (RR12) response regulator 12 [Source:NCBI gene (formerly Entrezgene);Acc:817056] identity=55.5; qcov=0.531; evalue=5.26e-103; confidence=medium
Rice	`Os02g0796500` (ORR3) - identity=56.4; qcov=0.553; evalue=2.95e-111; confidence=medium
GO	GO:0000160 (phosphorelay signal transduction system); GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0009736 (cytokinin-activated signaling pathway)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00072 (Response_reg); PF00249 (Myb_DNA-binding)
InterPro	-
eggNOG	-
NR	GeneID:130988118

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057767863.1`
2	Chromosome	染色体	0.00000	`XP_057767863.1`
3	Centromere	着丝粒	0.00000	`XP_057767863.1`
4	Chromatin	染色质	0.00000	`XP_057767863.1`
5	Telomere	端粒	0.00000	`XP_057767863.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:4904587`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B105,C16,C77
`Chr6:4904626`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr6:4904639`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr6:4904655`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:4904714`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A24,A5,A7,D4,D5
`Chr6:4904967`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr6:4904969`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B137,B78
`Chr6:4905237`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A23,B68,C61,C84
`Chr6:4905321`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr6:4905531`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B42,B43,B50,B72,C54
`Chr6:4906093`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:4906167`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767863.1

675 aa

338

675

Response_reg

Myb_DNA-binding

PF00072 Response_reg 22-131 aa PF00249 Myb_DNA-binding 201-251 aa

XP_057767865.1

647 aa

324

647

Response_reg

Myb_DNA-binding

PF00072 Response_reg 15-103 aa PF00249 Myb_DNA-binding 173-223 aa

XP_057767866.1

643 aa

322

643

Response_reg

Myb_DNA-binding

PF00072 Response_reg 15-99 aa PF00249 Myb_DNA-binding 169-219 aa

XP_057767867.1

622 aa

311

622

Response_reg

Myb_DNA-binding

PF00072 Response_reg 3-78 aa PF00249 Myb_DNA-binding 148-198 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767863.1`	Pfam	`PF00072`	Response_reg	Domain	22	131	5.5e-25	88.4	Response regulator receiver domain
`XP_057767863.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	201	251	2.2e-07	31.6	Myb-like DNA-binding domain
`XP_057767865.1`	Pfam	`PF00072`	Response_reg	Domain	15	103	3.8e-18	66.4	Response regulator receiver domain
`XP_057767865.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	173	223	2.1e-07	31.6	Myb-like DNA-binding domain
`XP_057767866.1`	Pfam	`PF00072`	Response_reg	Domain	15	99	3.7e-17	63.2	Response regulator receiver domain
`XP_057767866.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	169	219	2.1e-07	31.7	Myb-like DNA-binding domain
`XP_057767867.1`	Pfam	`PF00072`	Response_reg	Domain	3	78	6.2e-16	59.3	Response regulator receiver domain
`XP_057767867.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	148	198	2e-07	31.7	Myb-like DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057911880.1
AGATGGAAGAAAAAGTTGCTGTAAAAGAAAACCTCCATTATTTGTCCCCATAAACCTCCATTATTCAATCCCACCACACACATGCATATACATACACAAAAATGTATGTATACCCATATTTTATTAATATTTTTACCCACCTTTTGTCACCAATCACTAACATAGCAGAGAAAGGGAAAGAGGGCGAGAAGCAAAAGACAAAAAAGATCTACACATATGCAGAGTTCTTTTAGGGAGAGAGAGTGTGAGGAACTGATAAA...

XM_057911882.1
AAAAAGTTGCTGTAAAAGAAAACCTCCATTATTTGTCCCCATAAACCTCCATTATTCAATCCCACCACACACATGCATATACATACACAAAAATGTATGTATACCCATATTTTATTAATATTTTTACCCACCTTTTGTCACCAATCACTAACATAGCAGAGAAAGGGAAAGAGGGCGAGAAGCAAAAGACAAAAAAGATCTACACATATGCAGAGTTCTTTTAGGGAGAGAGAGTGTGAGGAACTGATAAAATTTGGTGT...

CDS

4 records

下载 CDS FASTA

LOC130988118
ATGACTGTGGAGAAAGTTAGGAGCGACAGCGAAAGCTACGACGATTTTCCGGCTGGCCTGCGTGTCCTCGCCGTTGACGACGACCCAATTTGCTTGAAGTTGCTCGATACTCTGCTTAGGAAATGCCAGTATCATGTGACTACAACGAGTCAGGCAAGGATGGCGCTGAAAATGTTAAGGGACAACAAAGATAGATTTGACTTGGTGATCAGTGATGTCCATATGCCGGACATGGATGGTTTTAAGCTTCTGGAACTTGT...

LOC130988118
ATGCCAGTATCATGGTGTGTTCTTCTTCTGCTATTTTCTCTCATGTTCACTGTGACTACAACGAGTCAGGCAAGGATGGCGCTGAAAATGTTAAGGGACAACAAAGATAGATTTGACTTGGTGATCAGTGATGTCCATATGCCGGACATGGATGGTTTTAAGCTTCTGGAACTTGTTGGTCTTGAAATGGATCTACCTGTTATCATGTTATCTGCAAACGGTGATCCCAAACTCGTGATGAAAGGGATTACTCATGGCGC...

Protein

4 records

下载 Protein FASTA

XP_057767863.1
MTVEKVRSDSESYDDFPAGLRVLAVDDDPICLKLLDTLLRKCQYHVTTTSQARMALKMLRDNKDRFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLVKPVRIEELRNIWQHVIRKKKTEPKNQNSSADQGNGNQSSGEGNGSQADRNGKCNRKRKDEEDFSEDNENENEDPATSKKPRVVWSIELHRKFVAAVNQLGIEKAVPKRILDLMNVEGLTRENVASHLQKYRLYLKRISSV...

XP_057767865.1
MPVSWCVLLLLFSLMFTVTTTSQARMALKMLRDNKDRFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLVKPVRIEELRNIWQHVIRKKKTEPKNQNSSADQGNGNQSSGEGNGSQADRNGKCNRKRKDEEDFSEDNENENEDPATSKKPRVVWSIELHRKFVAAVNQLGIEKAVPKRILDLMNVEGLTRENVASHLQKYRLYLKRISSVASQQANMVAALGVKDSHFMRIGPFEGLG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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