当前解析结果
SmilChr06G000586| 统一新 Gene ID | SmilChr06G000586 |
|---|---|
| 名称 | SmilChr06G000586 |
| 描述 | uncharacterized SmilChr06G000586 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 5039425 - 5044323 / + |
| NCBI Gene ID | LOC130988131 |
|---|---|
| GeneID | 130988131 |
| locus_tag | - |
| NCBI Name | LOC130988131 |
| 原始查询 | LOC130988131 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | D111/G-patch domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:820143]; symbol=AT3G09850; hit=AT3G09850; species=arabidopsis; confidence=medium |
| 产物 | D111/G-patch domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:820143]; symbol=AT3G09850; hit=AT3G09850; species=arabidopsis; confidence=medium |
| Arabidopsis | AT3G09850 (AT3G09850)D111/G-patch domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:820143] identity=43.4; qcov=1.02; evalue=8.37e-144; confidence=medium |
| Rice | Os08g0288500- identity=41.5; qcov=0.395; evalue=1.57e-57; confidence=low |
| GO | GO:0003676 (nucleic acid binding) |
| KEGG | - |
| Pfam | PF01424 (R3H); PF01585 (G-patch); PF12656 (G-patch_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988131 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057767889.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057767889.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057767889.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057767889.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057767889.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:5040482 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr6:5040518 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B10,B113,B132,C39 |
Chr6:5040545 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B24,B66,B76,C62 |
Chr6:5040662 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:5040699 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C28,C73 |
Chr6:5040835 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B68,C8 |
Chr6:5040921 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B95,C1,C2,C32,C68 |
Chr6:5041323 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr6:5041325 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr6:5041352 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:5041691 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr6:5041709 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767889.1PF01424
R3H 442-498 aa
PF01585
G-patch 633-677 aa
PF12656
G-patch_2 635-678 aa
PF01585
G-patch 729-772 aa
PF12656
G-patch_2 731-772 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767889.1 |
Pfam | PF01424 |
R3H | Domain | 442 | 498 | 2.6e-07 | 31.3 | R3H domain |
XP_057767889.1 |
Pfam | PF01585 |
G-patch | Family | 633 | 677 | 4.8e-32 | 110.3 | G-patch domain |
XP_057767889.1 |
Pfam | PF12656 |
G-patch_2 | Domain | 635 | 678 | 3.7e-15 | 56.4 | G-patch domain |
XP_057767889.1 |
Pfam | PF01585 |
G-patch | Family | 729 | 772 | 4.8e-32 | 110.3 | G-patch domain |
XP_057767889.1 |
Pfam | PF12656 |
G-patch_2 | Domain | 731 | 772 | 3.7e-15 | 56.4 | G-patch domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。