当前解析结果
SmilChr06G000592| 统一新 Gene ID | SmilChr06G000592 |
|---|---|
| 名称 | SmilChr06G000592 |
| 描述 | uncharacterized SmilChr06G000592 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 5106813 - 5107730 / - |
| NCBI Gene ID | LOC130988138 |
|---|---|
| GeneID | 130988138 |
| locus_tag | - |
| NCBI Name | LOC130988138 |
| 原始查询 | LOC130988138 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | stress induced protein [Source:NCBI gene (formerly Entrezgene);Acc:832595]; symbol=AT5G25240; hit=AT5G25240; species=arabidopsis; confidence=low |
| 产物 | stress induced protein [Source:NCBI gene (formerly Entrezgene);Acc:832595]; symbol=AT5G25240; hit=AT5G25240; species=arabidopsis; confidence=low |
| Arabidopsis | AT5G25240 (AT5G25240)stress induced protein [Source:NCBI gene (formerly Entrezgene);Acc:832595] identity=38.3; qcov=0.882; evalue=1.45e-10; confidence=low |
| Rice | Os02g0743200- identity=37.8; qcov=0.721; evalue=3.41e-07; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988138 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057767894.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057767894.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057767894.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057767894.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057767894.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:5107139 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr6:5107239 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B86,C33 |
Chr6:5107519 |
G |
GC |
1bp_insertion | frameshift_variant | 131 | A14,A15,A16,A19,A20,A22,A23,A24,A25,A5,A7,B1,B101,B103,B105,B106,B108,B11,B112,B114,B115,B119,B12,B120,B121,B123,B124,B125,B126,B130,B131,B137,B138,B139,B17,B18,B2,B22,B23,B26,B27,B29,B3,B31,B32,B35,B36,B38,B39,B42,B43,B48,B49,B5,B50,B51,B52,B53,B55,B6,B60,B62,B64,B65,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B79,B8,B81,B85,B90,B91,B92,B94,B97,B98,C1,C11,C12,C15,C16,C18,C2,C20,C21,C22,C23,C25,C26,C3,C30,C37,C4,C40,C41,C44,C45,C47,C49,C5,C52,C53,C55,C57,C62,C65,C67,C69,C70,C75,C76,C77,C78,C79,C80,C83,C85,C87,C9,D11,D3,D4,D5 |
Chr6:5107521 |
T |
TC |
1bp_insertion | frameshift_variant | 131 | A14,A15,A16,A19,A20,A22,A23,A24,A25,A5,A7,B1,B101,B103,B105,B106,B108,B11,B112,B114,B115,B119,B12,B120,B121,B123,B124,B125,B126,B130,B131,B137,B138,B139,B17,B18,B2,B22,B23,B26,B27,B29,B3,B31,B32,B35,B36,B38,B39,B42,B43,B48,B49,B5,B50,B51,B52,B53,B55,B6,B60,B62,B64,B65,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B79,B8,B81,B85,B90,B91,B92,B94,B97,B98,C1,C11,C12,C15,C16,C18,C2,C20,C21,C22,C23,C25,C26,C3,C30,C37,C4,C40,C41,C44,C45,C47,C49,C5,C52,C53,C55,C57,C62,C65,C67,C69,C70,C75,C76,C77,C78,C79,C80,C83,C85,C87,C9,D11,D3,D4,D5 |
Chr6:5107522 |
G |
GT |
1bp_insertion | frameshift_variant | 131 | A14,A15,A16,A19,A20,A22,A23,A24,A25,A5,A7,B1,B101,B103,B105,B106,B108,B11,B112,B114,B115,B119,B12,B120,B121,B123,B124,B125,B126,B130,B131,B137,B138,B139,B17,B18,B2,B22,B23,B26,B27,B29,B3,B31,B32,B35,B36,B38,B39,B42,B43,B48,B49,B5,B50,B51,B52,B53,B55,B6,B60,B62,B64,B65,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B79,B8,B81,B85,B90,B91,B92,B94,B97,B98,C1,C11,C12,C15,C16,C18,C2,C20,C21,C22,C23,C25,C26,C3,C30,C37,C4,C40,C41,C44,C45,C47,C49,C5,C52,C53,C55,C57,C62,C65,C67,C69,C70,C75,C76,C77,C78,C79,C80,C83,C85,C87,C9,D11,D3,D4,D5 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。