Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000609`

染色体: Chr06 坐标: 5251958-5258761 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000609`
名称	SmilChr06G000609
描述	uncharacterized SmilChr06G000609
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	5251958 - 5258761 / `+`

ID 对照

NCBI Gene ID	`LOC130988158`
GeneID	`130988158`
locus_tag	`-`
NCBI Name	`LOC130988158`
原始查询	`LOC130988158`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843878]; symbol=AT1G75420; hit=AT1G75420; species=arabidopsis; confidence=high
产物	UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843878]; symbol=AT1G75420; hit=AT1G75420; species=arabidopsis; confidence=high
Arabidopsis	`AT1G75420` (AT1G75420) UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843878] identity=71.5; qcov=0.968; evalue=0; confidence=high
Rice	`Os01g0262600` (OsGT1) - identity=68.7; qcov=0.935; evalue=0; confidence=high
GO	GO:0016757 (glycosyltransferase activity)
KEGG	-
Pfam	PF00534 (Glycos_transf_1); PF13692 (Glyco_trans_1_4); PF16994 (Glyco_trans_4_5)
InterPro	-
eggNOG	-
NR	GeneID:130988158

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057767919.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057767919.1`
3	Trans-golgi network	Trans-golgi network	0.20000	`XP_057767919.1`
4	Vacuole	液泡	0.20000	`XP_057767919.1`
5	Nucleus	细胞核	0.00000	`XP_057767919.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:5254176`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr6:5254207`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr6:5254229`	`T`	`TGC`	2bp_insertion	frameshift_variant	1	B76
`Chr6:5254229`	`T`	`TGC`	2bp_insertion	CDS_variant	1	B76
`Chr6:5254252`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr6:5254301`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B70,B71,B72,C62
`Chr6:5254378`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:5255649`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B23,B55,C23
`Chr6:5255657`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr6:5256725`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B23,B55,C23
`Chr6:5257170`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B86,C33
`Chr6:5257511`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B137,B69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767919.1

475 aa

238

475

Glyco_trans_4_5

Glycos_transf_1

Glyco_trans_1_4

PF16994 Glyco_trans_4_5 78-257 aa PF00534 Glycos_transf_1 262-444 aa PF13692 Glyco_trans_1_4 286-431 aa

XP_057767920.1

475 aa

238

475

Glyco_trans_4_5

Glycos_transf_1

Glyco_trans_1_4

PF16994 Glyco_trans_4_5 78-257 aa PF00534 Glycos_transf_1 262-444 aa PF13692 Glyco_trans_1_4 286-431 aa

XP_057767921.1

475 aa

238

475

Glyco_trans_4_5

Glycos_transf_1

Glyco_trans_1_4

PF16994 Glyco_trans_4_5 78-257 aa PF00534 Glycos_transf_1 262-444 aa PF13692 Glyco_trans_1_4 286-431 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767919.1`	Pfam	`PF16994`	Glyco_trans_4_5	Family	78	257	2.7e-69	232.9	Glycosyl-transferase family 4
`XP_057767919.1`	Pfam	`PF00534`	Glycos_transf_1	Domain	262	444	2.9e-22	79.7	Glycosyl transferases group 1
`XP_057767919.1`	Pfam	`PF13692`	Glyco_trans_1_4	Domain	286	431	3.3e-17	63.8	Glycosyl transferases group 1
`XP_057767920.1`	Pfam	`PF16994`	Glyco_trans_4_5	Family	78	257	2.7e-69	232.9	Glycosyl-transferase family 4
`XP_057767920.1`	Pfam	`PF00534`	Glycos_transf_1	Domain	262	444	2.9e-22	79.7	Glycosyl transferases group 1
`XP_057767920.1`	Pfam	`PF13692`	Glyco_trans_1_4	Domain	286	431	3.3e-17	63.8	Glycosyl transferases group 1
`XP_057767921.1`	Pfam	`PF16994`	Glyco_trans_4_5	Family	78	257	2.7e-69	232.9	Glycosyl-transferase family 4
`XP_057767921.1`	Pfam	`PF00534`	Glycos_transf_1	Domain	262	444	2.9e-22	79.7	Glycosyl transferases group 1
`XP_057767921.1`	Pfam	`PF13692`	Glyco_trans_1_4	Domain	286	431	3.3e-17	63.8	Glycosyl transferases group 1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009089992.1
CTACTAATTTACTTCTAGCGGGCCCCTCAAAAAAAATTTACTTCTAGTGGGAACGCACTCCAATCTGAACGACGTCGTTGCAGGCCAAGATGCGGCAATGCAGAGTGAAGCTTAGATCCAAGCAGTAAACAGTGAGCCAGTCAACAACTTTGCTTCAGATTCCCAAATTGGAGCCCTAGTGCATCAATTAGGTACTTAATTTGATCGTTGATCATTCTACTTGTACATATACAATCTAATGGCGAAGCATTCGACGGTGG...

XM_057911938.1
CACACTCCAAATCGCAGAACCCACTCCAAGAAGAATCGCCTCCATCTCCTAGTGCGTGATCCCCGTCTGCTTCGCAATCAAGTCGTCCATGGTTATCTGCTTCCCGAACGAGCTCGAGGGGTGGAAGGTCGCAATTGAGGCCAAGATGCGGCAATGCAGAGTGAAGCTTAGATCCAAGCAGTAAACAGTGAGCCAGTCAACAACTTTGCTTCAGATTCCCAAATTGGAGCCCTAGTGCATCAATTAGGTACTTAATTTGA...

CDS

3 records

下载 CDS FASTA

LOC130988158
ATGGCGAAGCATTCGACGGTGGCATCGTTCATTCCAGTCCAAAAGCGGTGGTCATTGATGATATTATTATGCATCGCTCTCTCCACCGCCTTCGCGTTCTTTATCGGAGCCTCATTCAATTCCTGTAACTCTGTCGAGTACCCCGACAACCACAATTTTAATGCTCCGATTCACTCATTCAACTCAGGCGGCACCACTGCTGCGAATGAAGAAAAATCGCTCGATTTTATGAAATCAAAGTTTGTGCTTATGGTCTCGCA...

Protein

3 records

下载 Protein FASTA

XP_057767919.1
MAKHSTVASFIPVQKRWSLMILLCIALSTAFAFFIGASFNSCNSVEYPDNHNFNAPIHSFNSGGTTAANEEKSLDFMKSKFVLMVSHELSLSGGPLLLMELAFLLRTVGTRVVWITNQKPAESDDVIFSLEQRMTDRGVEIMSAKGHETVDAALKADLVILNTAVAGKWLDAVLQENVARVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSQTTADYWKNRTHERLGIKMPETYVVHLGNSKELMEVAEDSVARRV...

XP_057767920.1
MAKHSTVASFIPVQKRWSLMILLCIALSTAFAFFIGASFNSCNSVEYPDNHNFNAPIHSFNSGGTTAANEEKSLDFMKSKFVLMVSHELSLSGGPLLLMELAFLLRTVGTRVVWITNQKPAESDDVIFSLEQRMTDRGVEIMSAKGHETVDAALKADLVILNTAVAGKWLDAVLQENVARVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSQTTADYWKNRTHERLGIKMPETYVVHLGNSKELMEVAEDSVARRV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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