当前解析结果
SmilChr01G002917| 统一新 Gene ID | SmilChr01G002917 |
|---|---|
| 名称 | SmilChr01G002917 |
| 描述 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 47891713 - 47901820 / + |
| NCBI Gene ID | LOC130988166 |
|---|---|
| GeneID | 130988166 |
| locus_tag | - |
| NCBI Name | LOC130988166 |
| 原始查询 | LOC130988166 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like |
| 产物 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like |
| Arabidopsis | AT3G14270 (FAB1B)phosphatidylinositol-4-phosphate 5-kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:820647] identity=55.2; qcov=1.02; evalue=0; confidence=high |
| Rice | Os08g0428900 (P0479C08.109)- identity=45.1; qcov=0.843; evalue=0; confidence=high |
| GO | GO:0000285 (1-phosphatidylinositol-3-phosphate 5-kinase activity); GO:0005524 (ATP binding); GO:0010008 (endosome membrane); GO:0046854 (phosphatidylinositol phosphate biosynthetic process); GO:0046872 (metal ion binding) |
| KEGG | smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)); smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00118 (Cpn60_TCP1); PF01363 (FYVE); PF01504 (PIP5K) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988166 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057767930.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057767930.1 |
| 3 | Endosome | 内体 | 0.20000 | XP_057767930.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057767930.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057767930.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:47892242 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B42,B43,C70,C85,C87 |
Chr1:47892343 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr1:47892484 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B123,B3 |
Chr1:47892607 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B26,B30,B64,C16 |
Chr1:47894054 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B128,B132,B15,B3 |
Chr1:47894129 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B34,C29 |
Chr1:47894245 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:47894481 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr1:47894497 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B67 |
Chr1:47894497 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr1:47894614 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,A25,B27,C2,C25 |
Chr1:47895258 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767930.1PF01363
FYVE 35-104 aa
PF00118
Cpn60_TCP1 403-651 aa
PF01504
PIP5K 1532-1698 aa
PF01504
PIP5K 1697-1753 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767930.1 |
Pfam | PF01363 |
FYVE | Domain | 35 | 104 | 1.8e-17 | 63.9 | FYVE zinc finger |
XP_057767930.1 |
Pfam | PF00118 |
Cpn60_TCP1 | Family | 403 | 651 | 8.8e-31 | 107.8 | TCP-1/cpn60 chaperonin family |
XP_057767930.1 |
Pfam | PF01504 |
PIP5K | Family | 1532 | 1698 | 1.6e-44 | 153.0 | Phosphatidylinositol-4-phosphate 5-Kinase |
XP_057767930.1 |
Pfam | PF01504 |
PIP5K | Family | 1697 | 1753 | 1.6e-44 | 153.0 | Phosphatidylinositol-4-phosphate 5-Kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。