Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000627`

染色体: Chr06 坐标: 5527278-5529380 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000627`
名称	SmilChr06G000627
描述	probable flavin-containing monooxygenase 1
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	5527278 - 5529380 / `-`

ID 对照

NCBI Gene ID	`LOC130988177`
GeneID	`130988177`
locus_tag	`-`
NCBI Name	`LOC130988177`
原始查询	`LOC130988177`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable flavin-containing monooxygenase 1
产物	probable flavin-containing monooxygenase 1
Arabidopsis	`AT1G19250` (FMO1) flavin-dependent monooxygenase 1 [Source:NCBI gene (formerly Entrezgene);Acc:838508] identity=39.5; qcov=1; evalue=2.79e-122; confidence=medium
Rice	`Os04g0223500` - identity=50.2; qcov=1; evalue=0; confidence=high
GO	GO:0004499 (N,N-dimethylaniline monooxygenase activity); GO:0050660 (flavin adenine dinucleotide binding); GO:0050661 (NADP binding)
KEGG	smil00430 (Taurine and hypotaurine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00743 (FMO-like); PF07992 (Pyr_redox_2); PF13434 (Lys_Orn_oxgnase); PF13450 (NAD_binding_8)
InterPro	-
eggNOG	-
NR	GeneID:130988177

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057767941.1`
2	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057767941.1`
3	Lipid droplet	脂滴	0.40000	`XP_057767941.1`
4	Nucleus	细胞核	0.00000	`XP_057767941.1`
5	Chromosome	染色体	0.00000	`XP_057767941.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:5527429`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A18,B114,B62,B75
`Chr6:5527465`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr6:5527565`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A8,C71
`Chr6:5527574`	`C`	`CTG`	2bp_insertion	frameshift_variant	1	A18
`Chr6:5527574`	`C`	`CTG`	2bp_insertion	CDS_variant	1	A18
`Chr6:5527670`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:5527680`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C27,C8
`Chr6:5527722`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B122,C54
`Chr6:5527724`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr6:5527755`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A20,B51,B88
`Chr6:5527850`	`G`	`GAT`	2bp_insertion	frameshift_variant	1	C42
`Chr6:5527850`	`G`	`GAT`	2bp_insertion	CDS_variant	1	C42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767941.1

519 aa

260

519

FMO-like

Pyr_redox_2

NAD_binding_8

Lys_Orn_oxgnase

PF00743 FMO-like 3-497 aa PF07992 Pyr_redox_2 4-244 aa PF13450 NAD_binding_8 7-42 aa PF13434 Lys_Orn_oxgnase 134-240 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767941.1`	Pfam	`PF00743`	FMO-like	Family	3	497	1.7e-43	149.6	Flavin-binding monooxygenase-like
`XP_057767941.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	4	244	2.8e-09	37.6	Pyridine nucleotide-disulphide oxidoreductase
`XP_057767941.1`	Pfam	`PF13450`	NAD_binding_8	Domain	7	42	9e-08	33.0	NAD(P)-binding Rossmann-like domain
`XP_057767941.1`	Pfam	`PF13434`	Lys_Orn_oxgnase	Family	134	240	8.3e-09	35.7	L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057911958.1
CTGTTGAGCCTATATTTTTCTACAAATAGTAAATTCGACGTCGACATTCCTTCTCAATATAAATCTAAGGAAGAAGCTCCAACTTGTCCATAAAGAATTGAAGATGGAGAAACGAGTAGCCATCGTGGGCGCGGGAGTCAGCGGCCTCCTCGCCTGCAAATACGCGTCTGCGAAAGGCTTCACTCCGATGGTTTTCGAAGAGCAAGATGAGGTGGGCGGGCTGTGGAATCACACCTTGGAATCCACCACTCTTCAAATTA...

CDS

1 records

下载 CDS FASTA

LOC130988177
ATGGAGAAACGAGTAGCCATCGTGGGCGCGGGAGTCAGCGGCCTCCTCGCCTGCAAATACGCGTCTGCGAAAGGCTTCACTCCGATGGTTTTCGAAGAGCAAGATGAGGTGGGCGGGCTGTGGAATCACACCTTGGAATCCACCACTCTTCAAATTACTAAACATTTATACGAGTTTTCAGACTTCCCATGGCCTTCTTCAGTCCCCGAAGAAACGCCTCCCCACAACACGCAACTTGTGGAATATCTGCAATCTTACGC...

Protein

1 records

下载 Protein FASTA

XP_057767941.1
MEKRVAIVGAGVSGLLACKYASAKGFTPMVFEEQDEVGGLWNHTLESTTLQITKHLYEFSDFPWPSSVPEETPPHNTQLVEYLQSYAHKFQLLQYVNFKCKVIDVDYVGESENEMRSWDLWGGDGKAFGSKGKWILRVSHAGDDSIKEYEAEFLVLCIGRFSGLPNFPEFAPGYGAEAFSGKVMHSMDFSNMDNAAAAQFIKGKRVAVIGAGKSAIDIAFECANVNGRDKPCTMIQRGAHWMLPHHAHSWGLTDFLIFTR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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