当前解析结果
SmilChr06G000632| 统一新 Gene ID | SmilChr06G000632 |
|---|---|
| 名称 | SmilChr06G000632 |
| 描述 | uncharacterized SmilChr06G000632 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 5585704 - 5586896 / + |
| NCBI Gene ID | LOC130988180 |
|---|---|
| GeneID | 130988180 |
| locus_tag | - |
| NCBI Name | LOC130988180 |
| 原始查询 | LOC130988180 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine-rich protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:832600]; symbol=AT5G25280; hit=AT5G25280; species=arabidopsis; confidence=medium |
| 产物 | serine-rich protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:832600]; symbol=AT5G25280; hit=AT5G25280; species=arabidopsis; confidence=medium |
| Arabidopsis | AT5G25280 (AT5G25280)serine-rich protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:832600] identity=54.5; qcov=0.642; evalue=1.43e-34; confidence=medium |
| Rice | Os08g0167249- identity=61.3; qcov=0.332; evalue=4.13e-19; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988180 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057767944.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057767944.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057767944.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057767944.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057767944.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:5586021 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B4,C43,D10 |
Chr6:5586064 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr6:5586089 |
C |
CT |
1bp_insertion | frameshift_variant | 83 | A10,A14,A15,A18,A2,A23,A8,B1,B101,B106,B107,B110,B113,B114,B115,B119,B124,B125,B127,B128,B129,B13,B132,B136,B140,B17,B18,B2,B26,B27,B29,B31,B38,B39,B46,B48,B57,B58,B62,B64,B66,B67,B69,B71,B76,B78,B86,B9,B90,B92,B97,C12,C14,C16,C18,C19,C20,C3,C36,C37,C38,C39,C42,C44,C45,C46,C47,C5,C50,C52,C53,C54,C56,C62,C74,C77,C8,C82,C84,C86,D6,D7,D8 |
Chr6:5586091 |
TC |
T |
1bp_deletion | frameshift_variant | 36 | A15,A18,B101,B107,B110,B114,B115,B125,B17,B26,B31,B38,B39,B48,B62,B64,B66,B71,B76,B8,B9,B90,B92,B97,C13,C20,C3,C38,C44,C47,C54,C62,C74,C77,C86,D6 |
Chr6:5586208 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr6:5586252 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B7 |
Chr6:5586352 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A24,B12 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。