Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000676`

染色体: Chr06 坐标: 5980406-5984173 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000676`
名称	SmilChr06G000676
描述	monogalactosyldiacylglycerol synthase 2, chloroplastic-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	5980406 - 5984173 / `+`

ID 对照

NCBI Gene ID	`LOC130988223`
GeneID	`130988223`
locus_tag	`-`
NCBI Name	`LOC130988223`
原始查询	`LOC130988223`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	monogalactosyldiacylglycerol synthase 2, chloroplastic-like
产物	monogalactosyldiacylglycerol synthase 2%2C chloroplastic-like
Arabidopsis	`AT5G20410` (MGD2) monogalactosyldiacylglycerol synthase 2 [Source:NCBI gene (formerly Entrezgene);Acc:832163] identity=80.5; qcov=0.919; evalue=0; confidence=high
Rice	`Os02g0802700` (OsMGD) - identity=77.5; qcov=0.875; evalue=0; confidence=high
GO	GO:0009247 (glycolipid biosynthetic process); GO:0016758 (hexosyltransferase activity)
KEGG	smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF04101 (Glyco_tran_28_C); PF06925 (MGDG_synth)
InterPro	-
eggNOG	-
NR	GeneID:130988223

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.20000	`XP_057767990.1`
2	Endoplasmic reticulum	内质网	0.20000	`XP_057767990.1`
3	Chloroplast	叶绿体	0.20000	`XP_057767990.1`
4	Chloroplast membrane	叶绿体膜	0.20000	`XP_057767990.1`
5	Golgi apparatus	高尔基体	0.20000	`XP_057767990.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:5981034`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B118,B45,B67,C63,C86
`Chr6:5982539`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B62,B7,C25
`Chr6:5982710`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:5982735`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A14,B120,B62,B7,C25
`Chr6:5983094`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:5983488`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B105,C20
`Chr6:5983687`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr6:5983753`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B62,B7,C25
`Chr6:5983786`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B1,B70,B71,C62,C83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767990.1

457 aa

228

457

MGDG_synth

Glyco_tran_28_C

PF06925 MGDG_synth 71-239 aa PF04101 Glyco_tran_28_C 268-401 aa

XP_057767991.1

457 aa

228

457

MGDG_synth

Glyco_tran_28_C

PF06925 MGDG_synth 71-239 aa PF04101 Glyco_tran_28_C 268-401 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767990.1`	Pfam	`PF06925`	MGDG_synth	Family	71	239	1.2e-60	205.2	Monogalactosyldiacylglycerol (MGDG) synthase
`XP_057767990.1`	Pfam	`PF04101`	Glyco_tran_28_C	Domain	268	401	4.5e-11	43.8	Glycosyltransferase family 28 C-terminal domain
`XP_057767991.1`	Pfam	`PF06925`	MGDG_synth	Family	71	239	1.2e-60	205.2	Monogalactosyldiacylglycerol (MGDG) synthase
`XP_057767991.1`	Pfam	`PF04101`	Glyco_tran_28_C	Domain	268	401	4.5e-11	43.8	Glycosyltransferase family 28 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912008.1
CCTCTCTCTTTTAACCGTCGGAAAAAAACAAACCCCCACACGTTTGCCATCTCATACTCCCCACCCTCCAACTGTCCACCTCTACTCTCTCTCTCTCTCTCTCTCGAAGCAATTCTTTCTGGGTTTCTGTTGGCGGCGAATTCTCGATTTCGTTTGTTTTAAGGTATGGAATTGCAGGACTAGGAGTTTCAATGCACGTTTCCTTCTCCCGTTTCGTTTCTTGTCGTAAAAATCCAATCTTGGAGGGTTTTTCGGATTTT...

XM_057912007.1
CCTCTCTCTTTTAACCGTCGGAAAAAAACAAACCCCCACACGTTTGCCATCTCATACTCCCCACCCTCCAACTGTCCACCTCTACTCTCTCTCTCTCTCTCTCTCGAAGCAATTCTTTCTGGGTTTCTGTTGGCGGCGAATTCTCGATTTCGTTTGTTTTAAGAGAAATCTGCATATCTATATATATATATATAGATAGATATGATGATGAAGGCGGATTCTCCGCGGGGTTCCATAAACAAGGTATTCGAAAGAGTAGG...

CDS

2 records

下载 CDS FASTA

LOC130988223
ATGATGATGAAGGCGGATTCTCCGCGGGGTTCCATAAACAAGGTATTCGAAAGAGTAGGGGTGTACGGATTTGGCGGGTCCAGCAGCCACAAAAGGTGCAAATACGCCGCCATAGATGATGATGATGAAGATGGAAACATGGAACTGGAGCAGATTGGCGCCGAGAGAACCAAGAATGTCCTCATTCTCATGAGCGATACCGGCGGCGGCCACCGCGCCTCCGCCGAGGCCATCAGGGACGCCTTCCACCTCGAGTACGG...

Protein

2 records

下载 Protein FASTA

XP_057767990.1
MMMKADSPRGSINKVFERVGVYGFGGSSSHKRCKYAAIDDDDEDGNMELEQIGAERTKNVLILMSDTGGGHRASAEAIRDAFHLEYGDQYRIFVKDVWKEYTGWPLNDMEGQYKFMVKHVQLWKFAFHGTSPRWIHSIYLAAIAAFYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQSLQRKVVFVTVITDLSTCHRTWFHPSVDRLYCPSEEVAKRALLDGLDESQTRVYGLPIRPSFCRAILSKDDLRVELELD...

XP_057767991.1
MMMKADSPRGSINKVFERVGVYGFGGSSSHKRCKYAAIDDDDEDGNMELEQIGAERTKNVLILMSDTGGGHRASAEAIRDAFHLEYGDQYRIFVKDVWKEYTGWPLNDMEGQYKFMVKHVQLWKFAFHGTSPRWIHSIYLAAIAAFYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQSLQRKVVFVTVITDLSTCHRTWFHPSVDRLYCPSEEVAKRALLDGLDESQTRVYGLPIRPSFCRAILSKDDLRVELELD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器