Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000690`

染色体: Chr06 坐标: 6118056-6123423 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000690`
名称	SmilChr06G000690
描述	putative clathrin assembly protein At5g35200
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	6118056 - 6123423 / `+`

ID 对照

NCBI Gene ID	`LOC130988237`
GeneID	`130988237`
locus_tag	`-`
NCBI Name	`LOC130988237`
原始查询	`LOC130988237`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative clathrin assembly protein At5g35200
产物	putative clathrin assembly protein At5g35200
Arabidopsis	`AT5G35200` (AT5G35200) ENTH/ANTH/VHS superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:833474] identity=67.4; qcov=1.02; evalue=0; confidence=high
Rice	`Os06g0175500` - identity=66.5; qcov=0.921; evalue=0; confidence=high
GO	GO:0000149 (SNARE binding); GO:0005545 (1-phosphatidylinositol binding); GO:0005546 (phosphatidylinositol-4,5-bisphosphate binding); GO:0005905 (clathrin-coated pit); GO:0006900 (vesicle budding from membrane); GO:0030136 (clathrin-coated vesicle); GO:0032050 (clathrin heavy chain binding); GO:0048268 (clathrin coat assembly); GO:0072583 (clathrin-dependent endocytosis)
KEGG	-
Pfam	PF07651 (ANTH)
InterPro	-
eggNOG	-
NR	GeneID:130988237

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057768012.1`
2	Cytosol	细胞质基质	0.40000	`XP_057768012.1`
3	Nucleus	细胞核	0.00000	`XP_057768012.1`
4	Chromosome	染色体	0.00000	`XP_057768012.1`
5	Centromere	着丝粒	0.00000	`XP_057768012.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:6119070`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,B12,B84
`Chr6:6120229`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,B12,B84
`Chr6:6120249`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B135,B56,B96,C73
`Chr6:6120989`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr6:6121276`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B135,B56,B96,C73
`Chr6:6121428`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr6:6121486`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B62,C52
`Chr6:6121502`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A24,B84
`Chr6:6121877`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B109,C34,C51
`Chr6:6122570`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,B80
`Chr6:6122786`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B4,B65,C37,C74
`Chr6:6122788`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B56,B61,B96,C73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768012.1

534 aa

267

534

ANTH

PF07651 ANTH 34-301 aa

XP_057768013.1

534 aa

267

534

ANTH

PF07651 ANTH 34-301 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768012.1`	Pfam	`PF07651`	ANTH	Repeat	34	301	5.8e-84	282.1	ANTH domain
`XP_057768013.1`	Pfam	`PF07651`	ANTH	Repeat	34	301	5.8e-84	282.1	ANTH domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912029.1
CAGAATATAGAAGCTGTGCAAACAGAATATAAATTTGTGTAATTATAAATAATTGATGTTTGCAATAAAAAAAGGTAAAAATAATGACGCCGACGGCCAACCAGAAGAGATTCATAGAGTCTTTTTTTGCAGACTATTCTTTTCTAGAGACAACAAACAAATAAAAGGACCCTCTCTCTCTCTCCACCACATTTCCGAGCTGAAAGTCAGAGCATTTTTCGGCTCCCGATCTCTGTATTGGCATCTCTTCATTGAGAATT...

XM_057912030.1
ACCAGAAGAGATTCATAGAGTCTTTTTTTGCAGACTATTCTTTTCTAGAGACAACAAACAAATAAAAGGACCCTCTCTCTCTCTCCACCACATTTCCGAGCTGAAAGTCAGAGCATTTTTCGGCTCCCGATCTCTGTATTGGCATCTCTTCATTGAGGTATTCCTTTGTCTTTTCTTCTTTCTCGTGTTTGAGGCTGTCAAGGATTTGAGCTGAAAAAGAATTTGGAGACAGAATGTCACGTGGCGGTACACAGAGCAGT...

CDS

2 records

下载 CDS FASTA

LOC130988237
ATGTCACGTGGCGGTACACAGAGCAGTATACGAAAAACACTCGGTGCCCTGAAGGACACCACGACTGTTAGTCTGGCAAAAATAAACAGCGGCTACAAGGAATTGGACATTGCCATTGTTAAGGCAACAAACCATGTCGAACGCCCTGCAAAGGAGAGGCATATTAAAGCTGTCTTTGCTGCTGTATCGGCCACCAGGCCTCGAGCTGATGTTGCTTATTGTATACATGCCCTTGCAAGAAGATTGGCAAAGACTCATAA...

Protein

2 records

下载 Protein FASTA

XP_057768012.1
MSRGGTQSSIRKTLGALKDTTTVSLAKINSGYKELDIAIVKATNHVERPAKERHIKAVFAAVSATRPRADVAYCIHALARRLAKTHNWAVALKTLIVIHRALREVDPTFQEEIINYGRSRGHMLNLAHFKDDSSPNAWDYSAWVRCYALFLEERMECFRVLKYDIETDRPRTKDLDTPDLLEHLPALQQLLHRVIGCQPQGAALHNFIIQLALSMVASESIKIYSAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQA...

XP_057768013.1
MSRGGTQSSIRKTLGALKDTTTVSLAKINSGYKELDIAIVKATNHVERPAKERHIKAVFAAVSATRPRADVAYCIHALARRLAKTHNWAVALKTLIVIHRALREVDPTFQEEIINYGRSRGHMLNLAHFKDDSSPNAWDYSAWVRCYALFLEERMECFRVLKYDIETDRPRTKDLDTPDLLEHLPALQQLLHRVIGCQPQGAALHNFIIQLALSMVASESIKIYSAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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