Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000698`

染色体: Chr06 坐标: 6212495-6216121 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000698`
名称	SmilChr06G000698
描述	uncharacterized SmilChr06G000698
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	6212495 - 6216121 / `+`

ID 对照

NCBI Gene ID	`LOC130988247`
GeneID	`130988247`
locus_tag	`-`
NCBI Name	`LOC130988247`
原始查询	`LOC130988247`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	OSJNBa0041P03.7; symbol=OSJNBa0041P03.7; hit=Os10g0493800; species=rice; confidence=high
产物	OSJNBa0041P03.7; symbol=OSJNBa0041P03.7; hit=Os10g0493800; species=rice; confidence=high
Arabidopsis	`AT3G53270` (AT3G53270) Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [Source:NCBI gene (formerly Entrezgene);Acc:824494] identity=48.4; qcov=0.753; evalue=7.36e-60; confidence=high
Rice	`Os10g0493800` (OSJNBa0041P03.7) - identity=50.5; qcov=0.792; evalue=3.35e-67; confidence=high
GO	GO:0019185 (snRNA-activating protein complex); GO:0042795 (snRNA transcription by RNA polymerase II); GO:0042796 (snRNA transcription by RNA polymerase III); GO:0043565 (sequence-specific DNA binding)
KEGG	-
Pfam	PF09808 (SNAPC1)
InterPro	-
eggNOG	-
NR	GeneID:130988247

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057768022.1`
2	Chromosome	染色体	0.80000	`XP_057768022.1`
3	Nucleoplasm	核质	0.20000	`XP_057768026.1`
4	Centromere	着丝粒	0.00000	`XP_057768022.1`
5	Chromatin	染色质	0.00000	`XP_057768022.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:6213526`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A16,B3,B90,B92,C83
`Chr6:6213614`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,B12,B84
`Chr6:6214004`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr6:6214892`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr6:6214906`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,C43
`Chr6:6215713`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,C43
`Chr6:6215778`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr6:6215878`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr6:6215887`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr6:6215891`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768022.1

318 aa

159

318

SNAPC1

PF09808 SNAPC1 6-201 aa

XP_057768023.1

318 aa

159

318

SNAPC1

PF09808 SNAPC1 6-201 aa

XP_057768024.1

317 aa

158

317

SNAPC1

PF09808 SNAPC1 6-200 aa

XP_057768025.1

317 aa

158

317

SNAPC1

PF09808 SNAPC1 6-200 aa

XP_057768026.1

255 aa

128

255

SNAPC1

PF09808 SNAPC1 1-138 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768022.1`	Pfam	`PF09808`	SNAPC1	Family	6	201	2.7e-52	178.3	Small nuclear RNA activating complex (SNAPc), subunit 1
`XP_057768023.1`	Pfam	`PF09808`	SNAPC1	Family	6	201	2.7e-52	178.3	Small nuclear RNA activating complex (SNAPc), subunit 1
`XP_057768024.1`	Pfam	`PF09808`	SNAPC1	Family	6	200	1.1e-49	169.8	Small nuclear RNA activating complex (SNAPc), subunit 1
`XP_057768025.1`	Pfam	`PF09808`	SNAPC1	Family	6	200	1.1e-49	169.8	Small nuclear RNA activating complex (SNAPc), subunit 1
`XP_057768026.1`	Pfam	`PF09808`	SNAPC1	Family	1	138	7.1e-30	105.2	Small nuclear RNA activating complex (SNAPc), subunit 1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057912039.1
TCGAAGTGAATCAATCAAATAATTGAATTTAAATAAATAAATATTTTCTAAAATCTAAAACTAAACTAAACCCCTATCCAAACTCGCGCACACAACAGCTCTCAACTCTCTAGCTCCGGTCACCGCCGCGCCGTCCGCTGCCCTCCAGCCGCGTGCCACCCGTCGCCGCCGCACCGCAGCAGGCAGCAGCTCCTCAAGGCTCAAGTCGTCGCTTCCCTGCCGAACCGCACCGCCGCTCTTCAGCCATTGCGTCGCTGCCG...

XM_057912041.1
GAATCAATCAAATAATTGAATTTAAATAAATAAATATTTTCTAAAATCTAAAACTAAACTAAACCCCTATCCAAACTCGCGCACACAACAGCTCTCAACTCTCTAGCTCCGGTCACCGCCGCGCCGTCCGCTGCCCTCCAGCCGCGTGCCACCCGTCGCCGCCGCACCGCAGCAGGCAGCAGCTCCTCAAGGCTCAAGTCGTCGCTTCCCTGCCGAACCGCACCGCCGCTCTTCAGCCATTGCGTCGCTGCCGGACCGCA...

CDS

5 records

下载 CDS FASTA

LOC130988247
ATGGACCTCAAGCTGTTCACGCTGGACATTGATGAGCTCATACATGAATTCACTCAGTGTGAATCAAGTGCTTTTGCTGAATTCAAAAGAGTTTGGCTTTCGAGGAAGTTTTCCTACATATTCGAGGCTAGCCCTTCGACTAATCAAGGTTTCTTTATGCAGTCGCTGTATGCGCATTCCATCAGCTACATGGTTTCAGCTGATTCTTTTTCGAAGAGATTAGGTGGGCTATATTGCCTGTACTGCCTGTATGAGACGCA...

Protein

5 records

下载 Protein FASTA

XP_057768022.1
MDLKLFTLDIDELIHEFTQCESSAFAEFKRVWLSRKFSYIFEASPSTNQGFFMQSLYAHSISYMVSADSFSKRLGGLYCLYCLYETQLFKPPFKIYLYLEELKKLKNLVIEAKAAGVKVVAALVKGMLERNMFLFGFVGVNEGSATERVNELTNDQNARIRSAYKLLFNNSRLEHFIHMDLDTELDVDLFKKRSSEYAAAKELAIKEASKVVDVENIKHIVENQRLIGDVVEKTAADWKSQKEALYRQTGFSPLSVAEAS...

XP_057768023.1
MDLKLFTLDIDELIHEFTQCESSAFAEFKRVWLSRKFSYIFEASPSTNQGFFMQSLYAHSISYMVSADSFSKRLGGLYCLYCLYETQLFKPPFKIYLYLEELKKLKNLVIEAKAAGVKVVAALVKGMLERNMFLFGFVGVNEGSATERVNELTNDQNARIRSAYKLLFNNSRLEHFIHMDLDTELDVDLFKKRSSEYAAAKELAIKEASKVVDVENIKHIVENQRLIGDVVEKTAADWKSQKEALYRQTGFSPLSVAEAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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