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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G000703

染色体: Chr06 坐标: 6277587-6283797 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G000703
名称SmilChr06G000703
描述uncharacterized protein At2g24330-like
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向6277587 - 6283797 / +

ID 对照

NCBI Gene IDLOC130988252
GeneID130988252
locus_tag-
NCBI NameLOC130988252
原始查询LOC130988252

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述integral membrane metal-binding family protein (DUF2296) [Source:NCBI gene (formerly Entrezgene);Acc:829235]; symbol=AT4G31080; hit=AT4G31080; species=arabidopsis; confidence=high
产物integral membrane metal-binding family protein (DUF2296) [Source:NCBI gene (formerly Entrezgene);Acc:829235]; symbol=AT4G31080; hit=AT4G31080; species=arabidopsis; confidence=high
ArabidopsisAT4G31080 (AT4G31080)
integral membrane metal-binding family protein (DUF2296) [Source:NCBI gene (formerly Entrezgene);Acc:829235]
identity=60.8; qcov=0.899; evalue=1.06e-144; confidence=high
RiceOs02g0631000
-
identity=57.3; qcov=0.832; evalue=8.39e-120; confidence=high
GOGO:0071782 (endoplasmic reticulum tubular network); GO:0071786 (endoplasmic reticulum tubular network organization)
KEGG-
PfamPF10058 (Zn_ribbon_10); PF31016 (Lunapark_N)
InterPro-
eggNOG-
NRGeneID:130988252

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 1.00000 XP_057768030.1
2 Endoplasmic reticulum membrane 内质网膜 1.00000 XP_057768030.1
3 Golgi apparatus 高尔基体 0.20000 XP_057768030.1
4 Nucleus 细胞核 0.00000 XP_057768030.1
5 Chromosome 染色体 0.00000 XP_057768030.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:6279767 G A EMS_canonical_SNV CDS_variant 1 B106
Chr6:6279812 G A EMS_canonical_SNV CDS_variant 4 A8,B127,B18,D8
Chr6:6280713 G A EMS_canonical_SNV CDS_variant 1 B136
Chr6:6282981 G A EMS_canonical_SNV CDS_variant 1 A14
Chr6:6283337 G A EMS_canonical_SNV CDS_variant 2 A22,B24
Chr6:6283440 TC T 1bp_deletion frameshift_variant 1 B123
Chr6:6283440 TC T 1bp_deletion CDS_variant 1 B123
Chr6:6283530 C T EMS_canonical_SNV CDS_variant 3 B13,B88,C28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768030.1
390 aa
N
1
195
390
Lunapark_N
Zn_ribbon_10
C
PF31016 Lunapark_N 48-176 aa PF10058 Zn_ribbon_10 287-337 aa
XP_057768031.1
390 aa
N
1
195
390
Lunapark_N
Zn_ribbon_10
C
PF31016 Lunapark_N 48-176 aa PF10058 Zn_ribbon_10 287-337 aa
XP_057768033.1
389 aa
N
1
194
389
Lunapark_N
Zn_ribbon_10
C
PF31016 Lunapark_N 47-175 aa PF10058 Zn_ribbon_10 286-336 aa
XP_057768034.1
389 aa
N
1
194
389
Lunapark_N
Zn_ribbon_10
C
PF31016 Lunapark_N 47-175 aa PF10058 Zn_ribbon_10 286-336 aa
XP_057768035.1
386 aa
N
1
193
386
Lunapark_N
Zn_ribbon_10
C
PF31016 Lunapark_N 44-172 aa PF10058 Zn_ribbon_10 283-333 aa
XP_057768036.1
386 aa
N
1
193
386
Lunapark_N
Zn_ribbon_10
C
PF31016 Lunapark_N 44-172 aa PF10058 Zn_ribbon_10 283-333 aa
XP_057768037.1
386 aa
N
1
193
386
Lunapark_N
Zn_ribbon_10
C
PF31016 Lunapark_N 44-172 aa PF10058 Zn_ribbon_10 283-333 aa
XP_057768038.1
386 aa
N
1
193
386
Lunapark_N
Zn_ribbon_10
C
PF31016 Lunapark_N 44-172 aa PF10058 Zn_ribbon_10 283-333 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057768030.1 Pfam PF31016 Lunapark_N Domain 48 176 2.8e-09 37.8 Lunapark N-terminal membrane domain
XP_057768030.1 Pfam PF10058 Zn_ribbon_10 Family 287 337 1.5e-20 73.4 ER junction formation factor lunapark, zinc ribbon finger
XP_057768031.1 Pfam PF31016 Lunapark_N Domain 48 176 2.8e-09 37.8 Lunapark N-terminal membrane domain
XP_057768031.1 Pfam PF10058 Zn_ribbon_10 Family 287 337 1.5e-20 73.4 ER junction formation factor lunapark, zinc ribbon finger
XP_057768033.1 Pfam PF31016 Lunapark_N Domain 47 175 2.8e-09 37.8 Lunapark N-terminal membrane domain
XP_057768033.1 Pfam PF10058 Zn_ribbon_10 Family 286 336 1.5e-20 73.4 ER junction formation factor lunapark, zinc ribbon finger
XP_057768034.1 Pfam PF31016 Lunapark_N Domain 47 175 2.8e-09 37.8 Lunapark N-terminal membrane domain
XP_057768034.1 Pfam PF10058 Zn_ribbon_10 Family 286 336 1.5e-20 73.4 ER junction formation factor lunapark, zinc ribbon finger
XP_057768035.1 Pfam PF31016 Lunapark_N Domain 44 172 2.7e-09 37.8 Lunapark N-terminal membrane domain
XP_057768035.1 Pfam PF10058 Zn_ribbon_10 Family 283 333 1.5e-20 73.4 ER junction formation factor lunapark, zinc ribbon finger
XP_057768036.1 Pfam PF31016 Lunapark_N Domain 44 172 2.7e-09 37.8 Lunapark N-terminal membrane domain
XP_057768036.1 Pfam PF10058 Zn_ribbon_10 Family 283 333 1.5e-20 73.4 ER junction formation factor lunapark, zinc ribbon finger
XP_057768037.1 Pfam PF31016 Lunapark_N Domain 44 172 2.7e-09 37.8 Lunapark N-terminal membrane domain
XP_057768037.1 Pfam PF10058 Zn_ribbon_10 Family 283 333 1.5e-20 73.4 ER junction formation factor lunapark, zinc ribbon finger
XP_057768038.1 Pfam PF31016 Lunapark_N Domain 44 172 2.7e-09 37.8 Lunapark N-terminal membrane domain
XP_057768038.1 Pfam PF10058 Zn_ribbon_10 Family 283 333 1.5e-20 73.4 ER junction formation factor lunapark, zinc ribbon finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA
XM_057912052.1
GTACTTGATTTTCAAGAAGAAAAAAAAGCTCCTTTTCTTCTTCATTGGGGGACCTAAACTGTTCATTCAAAGCTCTGTTTCCATTTTCTCATCATTTTTCAACTGAAAGAAAAAAAAAGGAATTTCATCGTAATCCATTCCCTCTCTATCTGAAACGCATCTCTCATTCGCTCAGTCCATTTTCAGCGCCGCGTTTCCGCCGCGCCGAATTCGATCAAAGATGGCCGAAGAATCCAAGAATGATCAAGGGGAGCTTGTGA...
XM_057912047.1
TCAAGAAGAAAAAAAAGCTCCTTTTCTTCTTCATTGGGGGACCTAAACTGTTCATTCAAAGCTCTGTTTCCATTTTCTCATCATTTTTCAACTGAAAGAAAAAAAAAGGAATTTCATCGTAATCCATTCCCTCTCTATCTGAAACGCATCTCTCATTCGCTCAGTCCATTTTCAGCGCCGCGTTTCCGCCGCGCCGAATTCGATCAAAGCTGAATGGGACATGGAATATCTTGGGTAGAGGATCAAAAGATGTGATGCTT...

CDS

8 records

下载 CDS FASTA
LOC130988252
ATGCTTTTGAAGATGGCCGAAGAATCCAAGAATGATCAAGGGGAGCTTGTGAAATCTACAGATACTGAGATCAAGAAGACCAAGAAACAGAAAGGAGTCCTATCTAGATTATGGAGAGCAGTATTTAGATTAGGTGGTGATGATTTTGAAAAGAGATTGCAACATATATCAAAGGAAGAGGCTACTGTTCTTGCCAGAATTACAAGGCGTTCTCAAAGTTCTCGGAGAACAACTAAGCAATTTATTATACTCTCTGTTGT...
LOC130988252
ATGCTTTTGAAGATGGCCGAAGAATCCAAGAATGATCAAGGGGAGCTTGTGAAATCTACAGATACTGAGATCAAGAAGACCAAGAAACAGAAAGGAGTCCTATCTAGATTATGGAGAGCAGTATTTAGATTAGGTGGTGATGATTTTGAAAAGAGATTGCAACATATATCAAAGGAAGAGGCTACTGTTCTTGCCAGAATTACAAGGCGTTCTCAAAGTTCTCGGAGAACAACTAAGCAATTTATTATACTCTCTGTTGT...

Protein

8 records

下载 Protein FASTA
XP_057768030.1
MLLKMAEESKNDQGELVKSTDTEIKKTKKQKGVLSRLWRAVFRLGGDDFEKRLQHISKEEATVLARITRRSQSSRRTTKQFIILSVVSEAIAVGYAIMTTRSLDLNWHIRALRVLPMFLLPVLFFITYSAFRSYTKMRDTKDHKTLDNLRAERQAKINELKEKTNYYTTQQLIQRYDPDPAAKAAAATVLASKLGADSGLKVYLGDDSNLIASVGKSNDMEVAATTGLRNRKQPHSRTYSMDSGFTDHPEEAMLTPSGVE...
XP_057768031.1
MLLKMAEESKNDQGELVKSTDTEIKKTKKQKGVLSRLWRAVFRLGGDDFEKRLQHISKEEATVLARITRRSQSSRRTTKQFIILSVVSEAIAVGYAIMTTRSLDLNWHIRALRVLPMFLLPVLFFITYSAFRSYTKMRDTKDHKTLDNLRAERQAKINELKEKTNYYTTQQLIQRYDPDPAAKAAAATVLASKLGADSGLKVYLGDDSNLIASVGKSNDMEVAATTGLRNRKQPHSRTYSMDSGFTDHPEEAMLTPSGVE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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