当前解析结果
SmilChr06G000719| 统一新 Gene ID | SmilChr06G000719 |
|---|---|
| 名称 | SmilChr06G000719 |
| 描述 | nuclear pore complex protein NUP160 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 6554586 - 6571493 / + |
| NCBI Gene ID | LOC130988270 |
|---|---|
| GeneID | 130988270 |
| locus_tag | - |
| NCBI Name | LOC130988270 |
| 原始查询 | LOC130988270 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | nuclear pore complex protein NUP160 |
| 产物 | nuclear pore complex protein NUP160 |
| Arabidopsis | AT1G33410 (SAR1)SUPPRESSOR OF AUXIN RESISTANCE1 [Source:NCBI gene (formerly Entrezgene);Acc:840234] identity=46.8; qcov=1; evalue=0; confidence=high |
| Rice | Os02g0142500- identity=53.4; qcov=0.128; evalue=5.24e-61; confidence=weak |
| GO | GO:0005515 (protein binding); GO:0005643 (nuclear pore); GO:0017056 (structural constituent of nuclear pore) |
| KEGG | smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF11715 (Beta-prop_Nup120_160); PF17238 (NUP160_helical_2); PF23300 (HEAT_Nup120); PF23347 (TPR_Nup160_C); PF23354 (TPR_NUP160_120_M) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988270 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057768055.1 |
| 2 | Nucleus membrane | 核膜 | 0.80000 | XP_057768055.1 |
| 3 | Chromosome | 染色体 | 0.60000 | XP_057768055.1 |
| 4 | Nuclear pore complex | 核孔复合体 | 0.20000 | XP_057768055.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057768055.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:6554742 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A6,B3,B47,B53,B58 |
Chr6:6554761 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A23,C8 |
Chr6:6555321 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr6:6555918 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B135,B56,B96,C73 |
Chr6:6561537 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B23,C53,C61,D3 |
Chr6:6562001 |
AGT |
A |
2bp_deletion | frameshift_variant | 1 | B68 |
Chr6:6562001 |
AGT |
A |
2bp_deletion | CDS_variant | 1 | B68 |
Chr6:6562084 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:6562156 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B36 |
Chr6:6562156 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B36 |
Chr6:6562382 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B16,C13 |
Chr6:6562400 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B35 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768055.1PF11715
Beta-prop_Nup120_160 61-526 aa
PF17238
NUP160_helical_2 544-736 aa
PF23300
HEAT_Nup120 922-1065 aa
PF23354
TPR_NUP160_120_M 958-1166 aa
PF23347
TPR_Nup160_C 1217-1480 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768055.1 |
Pfam | PF11715 |
Beta-prop_Nup120_160 | Repeat | 61 | 526 | 1.3e-42 | 146.8 | Nucleoporin Nup120/160, beta-propeller domain |
XP_057768055.1 |
Pfam | PF17238 |
NUP160_helical_2 | Domain | 544 | 736 | 1.4e-83 | 280.3 | NUP160, helical domain |
XP_057768055.1 |
Pfam | PF23300 |
HEAT_Nup120 | Repeat | 922 | 1065 | 3.6e-14 | 53.7 | Nucleoporin Nup120, HEAT repeats |
XP_057768055.1 |
Pfam | PF23354 |
TPR_NUP160_120_M | Repeat | 958 | 1166 | 9.5e-36 | 124.2 | NUP160/120 middle TPR |
XP_057768055.1 |
Pfam | PF23347 |
TPR_Nup160_C | Repeat | 1217 | 1480 | 1.6e-10 | 41.4 | Nup160 C-terminal TPR |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。